Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30232X
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 31 0.13
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.90
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 28 0.90
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 1.6
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 27 1.6
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 27 1.6
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.1
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 3.6
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 26 3.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 4.8
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 25 6.3
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 8.4
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 30.7 bits (66), Expect = 0.13
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 327 KKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQENLRPTDRINPLGTR 497
+ ++ + V E GL + L+ENV+ + H AA + + ++ + N LGT+
Sbjct: 699 ENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMKSYQELRPANVLGTK 755
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 163 GLCLIEKILRGIPDVGKVYLLMRPKKGKEISND*RSSLKIWYLR 294
GLC K+ R + V +++R EI N + + +W+L+
Sbjct: 1035 GLCCFAKVERIVRQTNGVLVVLRTLPSMEILNKLQGNCALWFLK 1078
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 27.9 bits (59), Expect = 0.90
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 240 RKRNIQRLEEFPKNLVFEKLLDTNTTDIFKKLVP 341
R + ++ L+EF K+ F + LD + D+F K +P
Sbjct: 213 RIKTVEDLKEFAKSFPFLEYLDRFSPDVFAKNLP 246
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 37 IVNHSYISQDTPEGRNKMTEESL-VRAFYSGKNFFIT 144
+VN S+ +QD PE N + + SL +R Y N F+T
Sbjct: 824 LVNFSFRTQD-PEASNFVIQPSLDIRNLYLSNNTFVT 859
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 121 SGKNFFITGGTGFVGLCLIEKILR 192
SGK +TG TGF+G + E++L+
Sbjct: 2 SGKLVLVTGVTGFIGAHVAEQLLQ 25
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 160 VGLCLIEKI-LRGIPDVGKVYLLMRPKKGK 246
VG EK+ L G DVG+VYL+ K GK
Sbjct: 190 VGPSSFEKVFLLGKGDVGRVYLVREKKSGK 219
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +3
Query: 237 ERKRNIQRL---EEFPKNLVFEKLLDTNTTDIFKKLVPISGDVGEANLGL 377
+R + I+RL E+F KN++ +KL+D +T DI + + G++ A + L
Sbjct: 21 KRYKRIKRLINNEQFCKNVILQKLVD-STKDIIEN--KVHGNILAATISL 67
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 175 IEKILRGIPDVGKVYLLMRPKK 240
+EKIL+ PDV +YL P +
Sbjct: 2113 VEKILKSYPDVHVIYLCCDPSR 2134
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 124 GKNFFITGGTGFVGLCLIEKILRGIPDVGKVYLLMRPKKGKEISND*R 267
GK ITGG+G +G + + +VG +Y R KK E + + R
Sbjct: 9 GKTTLITGGSGGIGFSIAKAFAAAGSNVGLLY--GRNKKALEYAAELR 54
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 327 KKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAA 437
+K+ ++GD+ N G+ + L E V+ VIH+ A
Sbjct: 1065 QKISVVNGDLALENWGIEERKWNKLTEVVDYVIHNGA 1101
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 369 LGLSPQDRQLLIENVNVVIHSAATLDFQENLRPTDR 476
LGL D ++L +++ H+ + F + +RPT R
Sbjct: 274 LGLGETDAEILTTLKDLLEHNVDVVTFGQYMRPTKR 309
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 66 ILTNI*MIHNNDYKTRFVIP 7
I T+ H++D+KTRF P
Sbjct: 55 ICTSFLCFHSDDFKTRFTFP 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,058
Number of Sequences: 5004
Number of extensions: 39895
Number of successful extensions: 91
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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