Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30232X
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               62   2e-10
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_2969| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 30/70 (42%), Positives = 46/70 (65%)
 Frame = +3

Query: 255 QRLEEFPKNLVFEKLLDTNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSA 434
           QR++   +  +F+ + + N  D   K+  I+GD+ EA+LGLSP+D  L+I +V +V HSA
Sbjct: 54  QRIDNMLQTRLFQNVRE-NDPDQLDKVTAITGDIAEADLGLSPEDMALIIGSVQIVFHSA 112

Query: 435 ATLDFQENLR 464
           AT+ F E LR
Sbjct: 113 ATVRFDEELR 122



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +1

Query: 106 VRAFYSGKNFFITGGTGFVGLCLIEKILRGIPDVGKVYLLMRPK 237
           ++ F++ K   ITGGTGF+G  L+EK+LR    V  +YLL R +
Sbjct: 4   IQTFFADKVVLITGGTGFLGKVLLEKLLRSCRTVKCIYLLTRSR 47


>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 10  NNKSCFIIIIVNHSYISQDTPEGRNKMTEESLVRAFYSGK 129
           + ++CF++++V H    + +P  R      S V A Y+ K
Sbjct: 426 DKRACFLVLVVQHEIQRESSPVHRKPRKHASNVNAVYANK 465


>SB_2969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 294 KLLDTNTTDIFKKLVPISGD-VGEANLGLSPQDRQLLIENVNV 419
           KLL+TN+ D+ +++VP+  D V +       QDR+ + E+  V
Sbjct: 68  KLLETNSADVNRRVVPLLRDAVHQLGENCLKQDRKSVTEDHEV 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,370,920
Number of Sequences: 59808
Number of extensions: 263892
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)