Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30232X
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    64   7e-11
Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva ...    29   2.5  
AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuroni...    29   2.5  
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 36/93 (38%), Positives = 54/93 (58%)
 Frame = +3

Query: 219 LINET*ERKRNIQRLEEFPKNLVFEKLLDTNTTDIFKKLVPISGDVGEANLGLSPQDRQL 398
           L+  T + K   +RL     + +F ++      + F KL  I GD+   NLG+ P+D  L
Sbjct: 43  LMIRTRKGKNPQERLSGLLHDPLFNRIRQEKP-EAFDKLKAIGGDMMVENLGMDPEDVML 101

Query: 399 LIENVNVVIHSAATLDFQENLRPTDRINPLGTR 497
           + +NVNVVIHSAAT+ F E+LR    +N +GT+
Sbjct: 102 IRDNVNVVIHSAATVKFDEHLRAAVTMNVIGTK 134



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 22/47 (46%), Positives = 34/47 (72%)
 Frame = +1

Query: 106 VRAFYSGKNFFITGGTGFVGLCLIEKILRGIPDVGKVYLLMRPKKGK 246
           VR  Y+G +  +TGGTGF+G  ++EK+L  I D+  +YL++R +KGK
Sbjct: 5   VRDVYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGK 51


>Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical
           protein ZC482.7 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 7   RNNKSCFIIIIVNHSYISQDTPEGRNKMTEESLVRAFYSGKNFFITGGTGFVGLCLIEKI 186
           RNNK+ F+  +V+ +YI  D  + R  +T  +      S   FF+   T F  +CL  KI
Sbjct: 308 RNNKTDFLKTLVSLTYIGGDCGDERVNITFSNA----SSLSIFFVISSTVFFFICLFFKI 363


>U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva
           protein 1 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 127 KNFFITGGTGFVGLCLIEKIL 189
           K   ITGG GFVG  L++K++
Sbjct: 137 KRILITGGAGFVGSHLVDKLM 157


>AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuronic
           acid decarboxylase protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 127 KNFFITGGTGFVGLCLIEKIL 189
           K   ITGG GFVG  L++K++
Sbjct: 137 KRILITGGAGFVGSHLVDKLM 157


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 258 RLEEFPKNLVFEKLLDTNTTDIFKKL 335
           RLE  P N++++ L+   T+ + +KL
Sbjct: 380 RLESLPSNVIYDSLMQKKTSPVQRKL 405


>U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical
           protein C01F1.3a protein.
          Length = 631

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 118 YSGKNFFITGGTGFVG 165
           Y+ KN  ITGG GF+G
Sbjct: 3   YTPKNVVITGGCGFIG 18


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,817,957
Number of Sequences: 27780
Number of extensions: 212337
Number of successful extensions: 447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)