Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30231
(602 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 302 3e-81
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 149 4e-35
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 136 4e-31
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 128 1e-28
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 115 1e-24
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 108 1e-22
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 97 2e-19
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 89 7e-17
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 86 7e-16
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 83 6e-15
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 77 4e-13
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 76 6e-13
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 74 2e-12
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 74 2e-12
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 71 2e-11
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 71 2e-11
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 64 3e-09
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 63 4e-09
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 61 2e-08
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 60 4e-08
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 60 5e-08
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 52 1e-05
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 47 4e-04
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 46 7e-04
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 44 0.002
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.045
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 40 0.045
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.060
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.079
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 38 0.14
UniRef50_Q5EK48 Cluster: GNAT family histone acetyltransferase G... 37 0.42
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 36 0.97
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 36 0.97
UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1; ... 34 2.3
UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2; ... 34 2.3
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 3.0
UniRef50_Q92614 Cluster: Myosin-XVIIIa; n=59; Euteleostomi|Rep: ... 34 3.0
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 3.9
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 33 6.9
UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwell... 32 9.1
UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa... 32 9.1
UniRef50_Q4DR98 Cluster: Putative uncharacterized protein; n=2; ... 32 9.1
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 302 bits (742), Expect = 3e-81
Identities = 147/174 (84%), Positives = 147/174 (84%)
Frame = +1
Query: 73 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 252
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGT
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 253 RQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 432
R P KSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Query: 433 ILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKKN 594
ILPSGLLLVTGPFAFNSCPLRRIPQ SLGNFKLPKHFNDDYFKKN
Sbjct: 145 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKN 198
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 149 bits (362), Expect = 4e-35
Identities = 78/171 (45%), Positives = 101/171 (59%)
Frame = +1
Query: 79 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRQ 258
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG R
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 259 YPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 438
K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138
Query: 439 PSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
SGLLLVTGPFA NSCPLRR+ Q + LG FK+P+H ND YF++
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRR 189
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 136 bits (329), Expect = 4e-31
Identities = 75/174 (43%), Positives = 97/174 (55%), Gaps = 6/174 (3%)
Frame = +1
Query: 88 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 255
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 256 QYPSNVGKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 429
+YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 430 GILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
L SGLLLVTGP N PLRR Q A + + N K+PKH D YFKK
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKK 219
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 128 bits (309), Expect = 1e-28
Identities = 72/172 (41%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Frame = +1
Query: 85 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRQYP 264
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 265 SNVGKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 438
+ YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQL 144
Query: 439 PSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKKN 594
+GLL VTGP+ N CPLRRI Q A + L KLP+ +D YFK+N
Sbjct: 145 KTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGLDDRYFKRN 196
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 115 bits (276), Expect = 1e-24
Identities = 71/169 (42%), Positives = 93/169 (55%), Gaps = 2/169 (1%)
Frame = +1
Query: 88 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRQYPS 267
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R P
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 268 NVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 447
+YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 448 LLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKH-FNDD-YFK 588
LLLVTGPF N PLRRIPQ A + + KLP+H F D+ YFK
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFK 176
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 108 bits (259), Expect = 1e-22
Identities = 55/128 (42%), Positives = 78/128 (60%)
Frame = +1
Query: 211 VVVKQIGGEKNGGTRQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 390
V+ K+IGG+KNGGTR + FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 391 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHF 570
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q + A + N K+P+H
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHI 163
Query: 571 NDDYFKKN 594
ND YF+++
Sbjct: 164 NDTYFRRH 171
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 97.5 bits (232), Expect = 2e-19
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +1
Query: 331 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQP 510
FS HVR+IR +++ GTV ILLAG H GKRV+ + L SGLLLVTGPF +N PLRR+ Q
Sbjct: 80 FSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQC 139
Query: 511 M*SAPPPEFSLGNFKLPKHFNDDYFKK 591
A + F +PKH +D+YF++
Sbjct: 140 YVIATSTRIDISKFDVPKHIDDEYFRR 166
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 89.0 bits (211), Expect = 7e-17
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +1
Query: 331 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQP 510
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ Q
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 511 M*SAPPPEFSLGNFKLPKHFNDDYFKK 591
A + N K+P ND++F++
Sbjct: 146 YVIATKTRIKIKNIKIPSQLNDEFFRR 172
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 85.8 bits (203), Expect = 7e-16
Identities = 49/129 (37%), Positives = 69/129 (53%)
Frame = +1
Query: 205 LTVVVKQIGGEKNGGTRQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 384
+ ++ K IGG KNGG R P G +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 385 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPK 564
ILLAG G RVV++ L SG LLVTGP+A N PL R+ Q A + + K
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDV-K 137
Query: 565 HFNDDYFKK 591
++ YF+K
Sbjct: 138 KIDNAYFRK 146
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 82.6 bits (195), Expect = 6e-15
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +1
Query: 352 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQPM*SAPP 528
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q A
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 529 PEFSLGNFKLPKHFNDDYFKK 591
+ ++ K+P+H ND+YFK+
Sbjct: 127 LKVNVSGVKIPEHINDEYFKR 147
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 76.6 bits (180), Expect = 4e-13
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +1
Query: 283 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 459
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 460 TGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKKN 594
TGPF N P+RR+ QP A + + + K F+D YF ++
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRD 153
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 76.2 bits (179), Expect = 6e-13
Identities = 57/173 (32%), Positives = 81/173 (46%)
Frame = +1
Query: 73 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 252
+ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 253 RQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 432
P FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 433 ILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
L SGLLLVTGPF N PLRR+ Q + + L K F+D YF K
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGK 163
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 74.1 bits (174), Expect = 2e-12
Identities = 40/94 (42%), Positives = 56/94 (59%)
Frame = +1
Query: 307 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 486
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 487 PLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFK 588
P+RR+ A + + + K F D+YFK
Sbjct: 80 PVRRVNPAYIIATSTKVDVSKADVSK-FTDEYFK 112
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 74.1 bits (174), Expect = 2e-12
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Frame = +1
Query: 208 TVVVKQIGGEKNGGTRQ----YPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 375
T+ K +G K G + +PS + +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 376 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 501
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRV 103
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 71.3 bits (167), Expect = 2e-11
Identities = 37/78 (47%), Positives = 48/78 (61%)
Frame = +1
Query: 352 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPP 531
+R ++ GTV I+LAGR AGKRVV + L SGL+L+TGPF N PLRRI Q A
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATST 146
Query: 532 EFSLGNFKLPKHFNDDYF 585
+ + + K+ ND YF
Sbjct: 147 KIDVSSVKVAATINDAYF 164
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +1
Query: 322 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 501
GR ++ V ++R +LK G V ILL G + GKRVVL+ +L SGLLLVTGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 63.7 bits (148), Expect = 3e-09
Identities = 35/72 (48%), Positives = 42/72 (58%)
Frame = +1
Query: 376 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFK 555
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q + + + + K
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 556 LPKHFNDDYFKK 591
KH D FKK
Sbjct: 73 TSKHLTDASFKK 84
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 63.3 bits (147), Expect = 4e-09
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 498
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 499 I 501
+
Sbjct: 84 V 84
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 60.9 bits (141), Expect = 2e-08
Identities = 39/103 (37%), Positives = 58/103 (56%)
Frame = +1
Query: 283 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 462
+YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L LL++
Sbjct: 9 WYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLIS 66
Query: 463 GPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
GPF N PLRR+ A + S+ + K FN +YF K
Sbjct: 67 GPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEYFAK 108
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 60.1 bits (139), Expect = 4e-08
Identities = 39/96 (40%), Positives = 50/96 (52%)
Frame = +1
Query: 304 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 483
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 484 CPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
PL+R+ + + NDDYFK+
Sbjct: 98 VPLKRVNSAYVIPTSTKVDVTGVN-ANQINDDYFKR 132
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 59.7 bits (138), Expect = 5e-08
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = +1
Query: 346 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 501
R++R ++++G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRV 119
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 51.6 bits (118), Expect = 1e-05
Identities = 42/140 (30%), Positives = 63/140 (45%)
Frame = +1
Query: 88 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRQYPS 267
RN L G R+S ++ +K Y + + V+K + G+KNGGT
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 268 NVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 447
K + + + + S P KH + + N TV I++ G+H +RVV + L G
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 448 LLLVTGPFAFNSCPLRRIPQ 507
LL+TGP A N L R Q
Sbjct: 160 FLLITGPLALNLVLLYRTHQ 179
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 46.8 bits (106), Expect = 4e-04
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +1
Query: 352 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRI 501
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRI 79
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 46.0 bits (104), Expect = 7e-04
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 412 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
KRVV + L SGLLL+TG F N PLRR+ Q A + + + K F+D YF K
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYFAK 214
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +1
Query: 355 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 468
RP+LK+GTV I++ G H GKR V+V +G++ + GP
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP 90
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.045
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +1
Query: 355 RPNLKIGTVCILLAGRHAGKRVVLVGILP 441
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 39.9 bits (89), Expect = 0.045
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 358 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 501
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRM 48
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.060
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 358 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 501
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.079
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +1
Query: 283 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 462
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 463 GPFAFNSCP 489
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 38.3 bits (85), Expect = 0.14
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 448 LLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
L GPF+ N P+RRI Q + + K+P DDYFK+
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYFKR 57
>UniRef50_Q5EK48 Cluster: GNAT family histone acetyltransferase
GCN5-B; n=1; Toxoplasma gondii|Rep: GNAT family histone
acetyltransferase GCN5-B - Toxoplasma gondii
Length = 1032
Score = 36.7 bits (81), Expect = 0.42
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -1
Query: 539 ENSGGGADHIG*GIRRSGHELKAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPI 369
E+SG + +G G RRS H A+GP S GR+P S PA R + P+
Sbjct: 145 EDSGRLSAFVGRGSRRSSHAEPAEGPSLPSGADGRLPASGPWASEAPPAGRSASAPV 201
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 35.5 bits (78), Expect = 0.97
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +1
Query: 298 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 477
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 478 NSCPLRRIPQ 507
N PL RI +
Sbjct: 65 NGIPLFRIDE 74
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 35.5 bits (78), Expect = 0.97
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 364 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 501
+ IG V + + GR AG++ V+V I+ +++TGP RR+
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRV 50
>UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02414.1 - Gibberella zeae PH-1
Length = 607
Score = 34.3 bits (75), Expect = 2.3
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 250 TRQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCI--LLAGRHAGKRVV 423
T Y + +P+Q KI + F++HV R+R NL+I I L+A + GK V+
Sbjct: 425 TEHYQDLESRDAFPSQIKIPCKAELASFTRHVERVRKNLEIRVTQIESLIAWLNEGK-VL 483
Query: 424 LVGIL 438
GIL
Sbjct: 484 FDGIL 488
>UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 84
Score = 34.3 bits (75), Expect = 2.3
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -3
Query: 174 FANELVFSLLV--EHLGFGETHHSVAQIIVPRFFR----RFFLSHRTCRCGSRLGRRF 19
FA EL FS++ EH+G T + P+ FR RF + R+CR G+R RRF
Sbjct: 20 FAGEL-FSVIARCEHIGGPNTDVDRRAVFWPKIFRFAAGRFQSTFRSCRVGARYSRRF 76
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 3.0
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 322 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 480
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q92614 Cluster: Myosin-XVIIIa; n=59; Euteleostomi|Rep:
Myosin-XVIIIa - Homo sapiens (Human)
Length = 2054
Score = 33.9 bits (74), Expect = 3.0
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 515 HIG*GIRRSGHELKAKGPVTKSRPLG-RIPTSTTLLPACLPARRMQTVPIFRLGRILRTC 339
H G GI R GH +A VTK P+ R+P L P L +Q P G LR
Sbjct: 179 HPGPGIPRPGHRSRAPELVTKKFPVDLRLPPVVPLPPPTLRELELQRRPTGDFGFSLRRT 238
Query: 338 LLNGRPPD 315
+ R P+
Sbjct: 239 TMLDRGPE 246
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 3.9
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 437 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 303
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 32.7 bits (71), Expect = 6.9
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +1
Query: 361 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFS 540
+ KIG + I+ + GK+ V +G G LL++G FN +I
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLK 100
Query: 541 LGNFKLPKHFNDDYFKK 591
NF L KH N DY ++
Sbjct: 101 GLNF-LTKHTNKDYLEE 116
>UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwellia
psychrerythraea 34H|Rep: Putative membrane protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 249
Score = 32.3 bits (70), Expect = 9.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 464 PVTKSRPLGRIPTSTTLLPA-CLP-ARRMQTVPIFRLGRILRTCLL 333
P TK G IP + T P+ C P A R+ V ++ +GRI CL+
Sbjct: 41 PTTKESLQGDIPVNVTSAPSGCSPQASRLNLVFLYHVGRIASYCLI 86
>UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os06g0717700 protein -
Oryza sativa subsp. japonica (Rice)
Length = 115
Score = 32.3 bits (70), Expect = 9.1
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 267 KRREVLLPHSGENPCFIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCTCWNSAQR 446
+R L H+G++PC I PS+ T + Q + SP W +C + + ++Q
Sbjct: 44 RRSHSFLRHNGQDPCLINQPSMHG--TWNTCQQSGKLLTFSPVWKSCSSKRSQMFQNSQD 101
Query: 447 SAFS 458
S S
Sbjct: 102 SVIS 105
>UniRef50_Q4DR98 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 1642
Score = 32.3 bits (70), Expect = 9.1
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +1
Query: 397 GRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFND 576
GRH RV LV ++P G + + A P RR S P +LG LP ND
Sbjct: 6 GRHVVSRVALVALVPGGSVRLLSNSALQLAPKRRTKT---SEPGKAAALGASALPTQKND 62
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,120,239
Number of Sequences: 1657284
Number of extensions: 12069597
Number of successful extensions: 31629
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 30384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31566
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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