Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30231
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    76   2e-14
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    75   4e-14
02_02_0470 - 10700092-10700505                                         30   1.6  
10_08_0951 - 21769342-21769752                                         29   3.7  
02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434     28   5.0  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
 Frame = +1

Query: 238 KNGGTRQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPN-----LKIGTVCILLAGR 402
           KNGGT  +P   GK     + K   +   +P +   R+  P      +  GTV ILLAGR
Sbjct: 31  KNGGT--FPK-AGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRSTITPGTVLILLAGR 87

Query: 403 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDY 582
           + GKRVV +  L SGLLL+TGPF  N  P+RR+ Q    A   +  +   K+ K F+D Y
Sbjct: 88  YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146

Query: 583 FKKN 594
           F ++
Sbjct: 147 FARD 150


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
 Frame = +1

Query: 289 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 462
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 463 GPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKKN 594
           GPF  N  P+RR+ QP   A   +  +    + K F+D YF ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRD 173


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 364 LKIGTVCILLAGRHAGKRVVLVGILPSG 447
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 364 LKIGTVCILLAGRHAGKRVVLVGILPSG 447
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434
          Length = 287

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 240 EWGNQTVPLKRREVLLPHSGENPCFIWWPSIQ 335
           +WGN+   +KR       S  N CF +WP+++
Sbjct: 208 DWGNKAGEIKRFAPSAAQS-TNQCFTFWPNVE 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,481
Number of Sequences: 37544
Number of extensions: 376051
Number of successful extensions: 942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)