Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30231
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    76   2e-14
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    76   2e-14
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    72   3e-13
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P...    29   1.8  
At2g27270.1 68415.m03277 expressed protein                             29   2.4  
At5g19360.1 68418.m02307 calcium-dependent protein kinase, putat...    28   4.1  
At3g46920.1 68416.m05092 protein kinase family protein similar t...    28   5.5  
At5g32169.1 68418.m03692 hypothetical protein                          27   9.6  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 57/173 (32%), Positives = 81/173 (46%)
 Frame = +1

Query: 73  STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 252
           + K  RN DL  GV ++S+S+M+HK+  +                + V            
Sbjct: 7   TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54

Query: 253 RQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 432
              P      FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV + 
Sbjct: 55  -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111

Query: 433 ILPSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
            L SGLLLVTGPF  N  PLRR+ Q        +  +    L K F+D YF K
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGK 163


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 57/171 (33%), Positives = 80/171 (46%)
 Frame = +1

Query: 79  KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRQ 258
           K  RN DL  GV ++S+S+M+HK+  +                + V              
Sbjct: 9   KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------D 55

Query: 259 YPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 438
            P      FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L
Sbjct: 56  APVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQL 113

Query: 439 PSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
            SGLLLVTGPF  N  PLRR+ Q        +  +    L K F+D YF K
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGK 163


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 56/171 (32%), Positives = 81/171 (47%)
 Frame = +1

Query: 79  KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRQ 258
           K  RN DL  GV ++S+S+M+HK+  +                 V  +     K     +
Sbjct: 9   KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGG---------VFPRHDAQPKVDAPVE 59

Query: 259 YPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 438
            P+     FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L
Sbjct: 60  KPAK----FYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQL 113

Query: 439 PSGLLLVTGPFAFNSCPLRRIPQPM*SAPPPEFSLGNFKLPKHFNDDYFKK 591
            SGLLLVTGPF  N  PLRR+ Q        +  +      K F+D YF K
Sbjct: 114 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYFGK 163


>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 944

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 252 QTVPLKRREVLLPHSGENPCFIWWPSIQQACTQDPTQPEDR 374
           Q  PL  +++ +   GE+P  + WPS   +  + P+ P D+
Sbjct: 604 QEPPLPMKDLDVDQVGEHPIILPWPSSPLSSPKTPSAPSDQ 644


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +1

Query: 235 EKNGGTRQYPSNVGKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGK 414
           +K+  T +      K   PT++K  A   G   SKH R +  +    + C+       GK
Sbjct: 3   KKDEATMKKNGPTTKREEPTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGK 55

Query: 415 RVVLVGILPSGLLLVTGPFAFNSCPLR-RIPQPM 513
            ++  G+  + +LL+   FAFN   ++ R+P+ M
Sbjct: 56  TIIYFGVPAALILLIICVFAFNYIAIQPRVPRFM 89


>At5g19360.1 68418.m02307 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748
          Length = 523

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 539 ENSGGGADHIG*GIRRSGHELKAKGPVTKSRPLGRI 432
           EN GGG       +R S H   +  P TK  P+G +
Sbjct: 21  ENGGGGVGAAEASVRASKHPPASPPPATKQGPIGPV 56


>At3g46920.1 68416.m05092 protein kinase family protein similar to
           MAP3K delta-1 protein kinase [Arabidopsis thaliana]
           GI:2253010; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 1171

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 423 TCWNSAQRSAFSYWTFCFQFVPATPYSSAYVI 518
           T W S+  S  +Y +   + VP  P SSAYV+
Sbjct: 246 TTWTSSNFSPQTYHSNVSRLVPPDPRSSAYVV 277


>At5g32169.1 68418.m03692 hypothetical protein
          Length = 258

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 120 THHSVAQIIVPRFFRRFFLSHRTCRCGSRLGRRFRL 13
           +HHS A  +    FR FF+ H T    +R  RR +L
Sbjct: 115 SHHSTAYSMTS--FRAFFIPHSTRHSSTRKKRRLQL 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,237
Number of Sequences: 28952
Number of extensions: 278176
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)