BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30230 (778 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 146 4e-36 SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 145 5e-36 SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.9 SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.2 SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.2 >SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 146 bits (353), Expect = 4e-36 Identities = 66/90 (73%), Positives = 79/90 (87%) Frame = +2 Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439 GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+IPGLTD VP+RLGPKRAS Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139 Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 529 KIR+ FNLSKEDDVR++V++R + P+KE K Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169 Score = 111 bits (268), Expect = 8e-26 Identities = 55/98 (56%), Positives = 67/98 (68%) Frame = +3 Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203 MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60 Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317 FPM QGVL RVRLL+ RA H R + E + V Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97 Score = 48.4 bits (110), Expect = 1e-06 Identities = 29/72 (40%), Positives = 38/72 (52%) Frame = +1 Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 672 R+ P KEGK KP KAPKIQRLVTP LQ AE+A+L+ Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215 Query: 673 AQRKKESKVRRQ 708 A+R E+K +++ Sbjct: 216 AKRVAEAKQKKE 227 >SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 145 bits (352), Expect = 5e-36 Identities = 65/90 (72%), Positives = 79/90 (87%) Frame = +2 Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439 GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+IPGLTD VP+RLGPKRAS Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139 Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 529 KIR+ FNLSKEDDVR++V++R + P+KE K Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169 Score = 111 bits (268), Expect = 8e-26 Identities = 55/98 (56%), Positives = 67/98 (68%) Frame = +3 Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203 MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60 Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317 FPM QGVL RVRLL+ RA H R + E + V Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97 Score = 49.6 bits (113), Expect = 5e-07 Identities = 30/72 (41%), Positives = 38/72 (52%) Frame = +1 Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 672 R+ P KEGK KP KAPKIQRLVTP LQ AE+A+L+ Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215 Query: 673 AQRKKESKVRRQ 708 A+R E+K +R+ Sbjct: 216 AKRVAEAKQKRE 227 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 25.8 bits (54), Expect = 6.9 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -1 Query: 553 VPYVWV*HFLFLPWLEHAFDDITTYIIFFAKVEQLTDFGSTF 428 + +V +FL L W FDD ++FF ++T++ F Sbjct: 148 IAFVCSPNFLTLKWNSSLFDDDLARLLFFMINSKITNYDLPF 189 >SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 25.4 bits (53), Expect = 9.2 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Frame = +3 Query: 45 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 224 P LFE + Y +R+ + ++L EW G++ V D + + + Sbjct: 319 PRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREM 377 Query: 225 LTNSRV-----RLLMQRATHVTDRAAMERENVNQFVD 320 L +++ + L++R + + A ++EN F D Sbjct: 378 LQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414 >SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces pombe|chr 2|||Manual Length = 932 Score = 25.4 bits (53), Expect = 9.2 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 478 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 344 +I + K E + GSTFG +G R++ L H+N QD Sbjct: 98 VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,078,786 Number of Sequences: 5004 Number of extensions: 60874 Number of successful extensions: 169 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 169 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 375345278 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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