Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30230
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 146 4e-36
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 145 5e-36
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.9
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.2
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 146 bits (353), Expect = 4e-36
Identities = 66/90 (73%), Positives = 79/90 (87%)
Frame = +2
Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+IPGLTD VP+RLGPKRAS
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139
Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 529
KIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 111 bits (268), Expect = 8e-26
Identities = 55/98 (56%), Positives = 67/98 (68%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
FPM QGVL RVRLL+ RA H R + E + V
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97
Score = 48.4 bits (110), Expect = 1e-06
Identities = 29/72 (40%), Positives = 38/72 (52%)
Frame = +1
Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 672
R+ P KEGK KP KAPKIQRLVTP LQ AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215
Query: 673 AQRKKESKVRRQ 708
A+R E+K +++
Sbjct: 216 AKRVAEAKQKKE 227
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 145 bits (352), Expect = 5e-36
Identities = 65/90 (72%), Positives = 79/90 (87%)
Frame = +2
Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+IPGLTD VP+RLGPKRAS
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139
Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 529
KIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 111 bits (268), Expect = 8e-26
Identities = 55/98 (56%), Positives = 67/98 (68%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
FPM QGVL RVRLL+ RA H R + E + V
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97
Score = 49.6 bits (113), Expect = 5e-07
Identities = 30/72 (41%), Positives = 38/72 (52%)
Frame = +1
Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 672
R+ P KEGK KP KAPKIQRLVTP LQ AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215
Query: 673 AQRKKESKVRRQ 708
A+R E+K +R+
Sbjct: 216 AKRVAEAKQKRE 227
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 553 VPYVWV*HFLFLPWLEHAFDDITTYIIFFAKVEQLTDFGSTF 428
+ +V +FL L W FDD ++FF ++T++ F
Sbjct: 148 IAFVCSPNFLTLKWNSSLFDDDLARLLFFMINSKITNYDLPF 189
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +3
Query: 45 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 224
P LFE + Y +R+ + ++L EW G++ V D + + +
Sbjct: 319 PRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREM 377
Query: 225 LTNSRV-----RLLMQRATHVTDRAAMERENVNQFVD 320
L +++ + L++R + + A ++EN F D
Sbjct: 378 LQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 478 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 344
+I + K E + GSTFG +G R++ L H+N QD
Sbjct: 98 VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,786
Number of Sequences: 5004
Number of extensions: 60874
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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