Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30230
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 7e-27
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 116 2e-26
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 30 2.4
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 4.1
11_01_0125 + 1018059-1018403 29 5.4
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 7.2
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 9.5
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 118 bits (283), Expect = 7e-27
Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Frame = +2
Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138
Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 556
RASKIRKLFNLSK+DDVR+YV +R + KK+ P I+ L
Sbjct: 139 RASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 111 bits (268), Expect = 5e-25
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
FPMKQGVLT RVRLL+ R T
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGT 81
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/64 (46%), Positives = 34/64 (53%)
Frame = +1
Query: 526 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRR 705
+N K KAPKIQRLVTP+ LQ S AEY KLLAQR KE + RR
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERR 228
Query: 706 QEEI 717
E +
Sbjct: 229 SESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 116 bits (279), Expect = 2e-26
Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Frame = +2
Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138
Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 556
RASKIRKLFNL+K+DDVR+YV +R + KK+ P I+ L
Sbjct: 139 RASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 114 bits (275), Expect = 6e-26
Identities = 50/81 (61%), Positives = 62/81 (76%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
FPMKQGVLT+ RVRLL+ R T
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGT 81
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/64 (46%), Positives = 34/64 (53%)
Frame = +1
Query: 526 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRR 705
+N K KAPKIQRLVTP+ LQ S AEY KLLAQR KE + RR
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERR 228
Query: 706 QEEI 717
E +
Sbjct: 229 SESL 232
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 179 RWRQRQARIPDE-TGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRG 319
R+R + ++ DE + RP ++ S+S + PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 672 CTEKEGIQGASPGRDQTQAVSFN 740
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>11_01_0125 + 1018059-1018403
Length = 114
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 155 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGC 322
+EG+ RWR+ AR RP + S G + G K +++RGC
Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 230 KQPCSSSDAKGHSCYRPRRDGERKRK 307
K PCSS+ G C+ R + KR+
Sbjct: 14 KSPCSSAGGGGRGCHNERGSADHKRR 39
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 191 RQARIPDET--GRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 364
++ +IP + GR +K+ S++D + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKRKSTADTS----FNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 365 RKGAQ 379
R+ A+
Sbjct: 685 REEAE 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,589,135
Number of Sequences: 37544
Number of extensions: 464049
Number of successful extensions: 1406
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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