Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30230
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 155 3e-38
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 37 0.021
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 29 3.2
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74) 29 4.2
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 29 5.5
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 5.5
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 7.3
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 9.7
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 155 bits (377), Expect = 3e-38
Identities = 81/134 (60%), Positives = 96/134 (71%), Gaps = 9/134 (6%)
Frame = +2
Query: 155 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------AKGHSCYRPRRDGERKRK 307
+ G C W+ RI D+ G P KQ ++ +KGHSCYRPRR GERKRK
Sbjct: 3 VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62
Query: 308 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 487
SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+
Sbjct: 63 SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 122
Query: 488 YVVKRVLQPRKEKK 529
YV++R L P KE K
Sbjct: 123 YVIRRPL-PEKEGK 135
Score = 79.0 bits (186), Expect = 4e-15
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = +3
Query: 126 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQR 260
EV + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+ +
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/70 (48%), Positives = 41/70 (58%)
Frame = +1
Query: 508 PAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKK 687
P KEGK K + KAPKIQRLVTPVVLQ A+YAKLLA+R K
Sbjct: 130 PEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAK 186
Query: 688 ESKVRRQEEI 717
E+K +R E++
Sbjct: 187 EAKEKRHEQL 196
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 251 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 102
Q+ + A+ D L H +SL V+ SD + ++LP I + Y H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 29.5 bits (63), Expect = 3.2
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 293 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK-IRKLFNLSK 469
+ K KSV+ VD + S L R AQE L DG ++L A K + K L K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248
Query: 470 EDDVRRYVVKRVLQPRKEKK 529
+ R +V+ + +KEK+
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268
>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
Length = 172
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 311 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 451
VR C +D +VLA + + A E GLT+G V GP R +++
Sbjct: 86 VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 132 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 215
E D+ G EW+G+V G D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 401 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 499
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 643 SSEAEYAKLLAQRKKESKVRRQEEIK 720
++EAE +L Q+K+E K +R+EE++
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMR 1198
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 621 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSI 529
L+QSE+ T T NY P++L C GF +
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,308,343
Number of Sequences: 59808
Number of extensions: 520785
Number of successful extensions: 1532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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