Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30230
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             117   8e-27
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   113   9e-26
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   2.0  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   2.0  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   4.5  
At1g21390.1 68414.m02676 expressed protein                             28   6.0  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   7.9  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  117 bits (282), Expect = 8e-27
 Identities = 63/105 (60%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPK 138

Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 556
           RASKIRKLFNL KEDDVR+YV   +R    +K KK+   P I+ L
Sbjct: 139 RASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRL 183



 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/81 (61%), Positives = 61/81 (75%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
           FPMKQGVLT  RVRLL+ R T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/64 (42%), Positives = 32/64 (50%)
 Frame = +1

Query: 526 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRR 705
           +  K   KAPKIQRLVTP+ LQ                 S  A+Y KLLA R KE + RR
Sbjct: 169 KKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRR 228

Query: 706 QEEI 717
            E +
Sbjct: 229 SESL 232


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  113 bits (273), Expect = 9e-26
 Identities = 51/81 (62%), Positives = 61/81 (75%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
           FPMKQGVLT  RVRLL+ R T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score =  113 bits (272), Expect = 1e-25
 Identities = 62/105 (59%), Positives = 74/105 (70%), Gaps = 5/105 (4%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPK 138

Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 556
           RASKIRKLFNL KEDDVR YV   +R    +K K++   P I+ L
Sbjct: 139 RASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRL 183



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 30/68 (44%), Positives = 36/68 (52%)
 Frame = +1

Query: 514 KEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKES 693
           K+GKE +K    APKIQRLVTP+ LQ                 S  A+Y KLLA R KE 
Sbjct: 169 KKGKEVSK----APKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQ 224

Query: 694 KVRRQEEI 717
           + RR E +
Sbjct: 225 RDRRSESL 232


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +2

Query: 392 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEK 526
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+   +K++
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKE 332


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 45  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 212
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g21390.1 68414.m02676 expressed protein
          Length = 248

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 161 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRD-GERKRKSVRGCIVDAN 337
           G+C+   WR    + P    RP+     S D+K  +  R +R+  E   K    C     
Sbjct: 28  GVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRELMEMVSKMPESCY---E 84

Query: 338 LSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 487
           LS+  LV V+   +    + D  +P+R    R SK+ +     K  D  R
Sbjct: 85  LSLKDLVEVKVNQENERKVFD-ELPKR--ANRQSKVVRKTKSDKRVDPNR 131


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKL 454
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,683,076
Number of Sequences: 28952
Number of extensions: 343622
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)