Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30229
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    29   0.90 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    28   1.6  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    28   1.6  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.6  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    26   4.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   4.8  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   6.4  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   6.4  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 617 NPAQDGLAPPGGAPS----YQQPLYLQEP 691
           N  Q G APP G P      QQP+Y+Q+P
Sbjct: 32  NYPQQGYAPPQGYPQGGYPAQQPMYVQQP 60


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 350 CGHSIPIRAQNSKNYDGPFTAS 285
           C H I + +Q SKN++G F +S
Sbjct: 317 CSHEINVLSQQSKNFNGVFESS 338


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 435 YSRRQEQCVRHE*SDISHSFI--W*RRFDIPLI 527
           Y RR+ + V H  S  + +F+  W + FDIPL+
Sbjct: 89  YERRESKLVSHVCSLFTSAFVFNWPKHFDIPLL 121


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 20  FPAGAPSRFRNYTPACRARVPATCSP 97
           FPA +P   R  TP   AR P   SP
Sbjct: 34  FPASSPGSTRLTTPRTTARTPLASSP 59


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 600 AQRGVIVCTEYAYSGLLIPA 541
           A++G+++CT  A  GL IPA
Sbjct: 385 AEKGILLCTNVAARGLDIPA 404


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 516 IPLIHGQHAPGSGVQNTH 569
           +P ++GQ+AP +G+ N H
Sbjct: 688 VPPMYGQYAPNNGMMNMH 705


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 385 LYNMYKRPENLEVPLSATRDAKNSVYAMND 474
           L+N+  +     +P+S+T+D+K S Y+  D
Sbjct: 104 LHNLLSKAFRSTLPMSSTKDSKKSRYSSPD 133


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 6   PIHLGFRRVLPRGSATIPQRAEPACRPRALRNPLDTGGTPLFCLNFI 146
           P H G +  L R  ATI  R+ P    R      D   +P FC +F+
Sbjct: 281 PPHTGMK--LAREVATISYRSGPEWEQRFGNRRADPSVSPAFCPDFL 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,032
Number of Sequences: 5004
Number of extensions: 63610
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)