Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30229
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.71
01_05_0534 + 22999876-23000333,23000835-23000949 30 1.6
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 2.9
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 29 2.9
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350... 29 2.9
03_02_0723 + 10694128-10694793 29 2.9
01_06_1809 - 40029628-40030539 29 2.9
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059... 29 3.8
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 29 3.8
08_02_1282 - 25852113-25852406,25852495-25852668,25852849-258529... 29 5.0
08_02_0722 + 20416573-20416765,20417738-20417832,20418200-204183... 29 5.0
01_06_1400 - 37036957-37037705,37037809-37037995,37038108-370382... 29 5.0
01_05_0223 - 19467303-19467326,19467485-19467601,19468143-194682... 29 5.0
09_05_0012 - 20063456-20064601 28 6.6
09_04_0651 - 19224403-19225032 28 6.6
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 6.6
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 28 8.8
03_01_0095 + 759530-760123 28 8.8
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 554 SPEYAYSVHTITPRCAAVGMMNPAQDGLAPPGG--APSYQQPLYLQEPHTPVTTHSGAS 724
SP +AYS + PR + +P +P +PSY QP P +P TT G S
Sbjct: 1754 SPSHAYSPSS--PRLSPYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSPTSPYTTSGGPS 1810
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 620 PAQDGLAPPGGAPSYQQPLYLQEPHTPVTTHSGASAP 730
PA L+PP P+ P L +P TPV + +S+P
Sbjct: 49 PAAPPLSPPPKTPTLSTPPTLSQPPTPVKPAAPSSSP 85
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -2
Query: 141 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRGVS 7
S S KAGC RAD + G R G+ G P GN G S
Sbjct: 119 SGSGKAGCVGSRADQDGRLDGREVRDGGI----SSGGPRGNTGPS 159
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 604 CGAAWCNCVY*ICVFWTPDPGACCPCIKGISNLRH 500
CG +C+Y +C +W P G C G+ N+R+
Sbjct: 673 CGVPQEDCIYFMCDYWRPYAGDPL-CDSGVYNMRN 706
>05_01_0442 -
3500849-3500866,3500950-3501027,3501260-3501352,
3501419-3501536,3502815-3502945,3503027-3503299,
3504825-3504882,3505065-3505388,3507404-3507852,
3509514-3509554,3510263-3510412,3510519-3510906
Length = 706
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = -2
Query: 141 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRGVS 7
S S K GC RAD + G R G+ G P GN G S
Sbjct: 214 SGSGKGGCVGSRADQDGRIGGREVRDGGI----SSGGPKGNTGPS 254
>03_02_0723 + 10694128-10694793
Length = 221
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +1
Query: 526 YTGSMRRDQESRI--RIFSTHNYTTLRRSRHDESSTGRLGPTRWCSFLSTTSLFTRAAHA 699
Y G + ++E+ + R S +RH E + G G RWC L T T
Sbjct: 131 YGGELTNEEEAALAARSVSRRGGRDAEAARHREGAAGEEGRERWCPELLVTRPRTHRLLR 190
Query: 700 CHNT 711
C T
Sbjct: 191 CSAT 194
>01_06_1809 - 40029628-40030539
Length = 303
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 377 HTSCTICTRDLKISKCPCPL 436
HT C +C+R+L +S+ CPL
Sbjct: 272 HTFCRLCSRELWVSRGNCPL 291
>01_06_0943 +
33204112-33204136,33204703-33205743,33205786-33205926,
33206205-33206245,33208250-33208346,33208599-33208836,
33208937-33209087,33209155-33209454
Length = 677
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 277 IFLKGYFDPAVAAHKYLAIDFSQKVHFVVYY 185
+F+ G+F P ++H+Y+ I +S V+ + +
Sbjct: 35 VFVLGFFSPGASSHRYVGIWYSNPVNRTIVW 65
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 167 VQLSAIINEVQAKKRGAASVERIAESTWPARG 72
+Q SA+ N + A + G A VE + E+ W ARG
Sbjct: 232 IQASAV-NWLAAMEGGGAGVEGVKETAWSARG 262
>08_02_1282 -
25852113-25852406,25852495-25852668,25852849-25852940,
25853465-25853587,25853691-25853721,25854295-25854434,
25854871-25854932,25855027-25855103,25855766-25855868,
25856146-25856207,25857213-25857374
Length = 439
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 599 AAVGMMNPAQDGLAPPGGAPSYQQPLYLQEPHTPVT 706
AA+ M P +G PPG PS + +Y+ H VT
Sbjct: 50 AAMTQMEPISNGNLPPGFDPSTCRSVYVGNVHPNVT 85
>08_02_0722 +
20416573-20416765,20417738-20417832,20418200-20418317,
20418494-20418510,20418601-20418663,20420145-20420219
Length = 186
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 587 TPRCAAVGMMNPAQDGLAPPGGA 655
+PRCAAV +++PA G+A GGA
Sbjct: 3 SPRCAAVALLHPA--GVAAGGGA 23
>01_06_1400 -
37036957-37037705,37037809-37037995,37038108-37038205,
37039562-37039655
Length = 375
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +2
Query: 473 IRHFTLLHLVTKI*YSFNTRAACAGIRS----PEYAYSVHTITPRCAAVGMMN 619
+RH L+ LV + YSF AAC + S PE YS+ R G+ N
Sbjct: 101 LRHVNLISLVLCLAYSFCAVAACIYLGSSKGAPEKDYSIAGANTRDRVFGVFN 153
>01_05_0223 -
19467303-19467326,19467485-19467601,19468143-19468256,
19468575-19468697,19468846-19468935,19469765-19469890,
19471942-19471995,19472068-19472142,19472222-19472329,
19472556-19472627,19473375-19473545
Length = 357
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 125 RGAASVERIAESTWPARGLGTLGYSCGTAREHPPETEVYRG 3
+G + S WPA+G L +CGT PE ++G
Sbjct: 126 QGNLKISDFGLSAWPAQGGALLRTTCGTPNYVAPEVLSHKG 166
>09_05_0012 - 20063456-20064601
Length = 381
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 614 MNPAQDGLAPPGGAPSYQQPL--YLQEPHTPVTTHSGASA 727
M+PA + PPGGA + QP+ + +P+ +GAS+
Sbjct: 299 MSPATVWMVPPGGAGAVNQPIQYWAFQPNPDHANFAGASS 338
>09_04_0651 - 19224403-19225032
Length = 209
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 377 HTSCTICTRDLKISKCPCPL 436
HT C C R+L++ + CPL
Sbjct: 178 HTFCRACARELRVGRGRCPL 197
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 313 FEFCARIGMECPQTASENHDRSYKLY-NMYKRPENLEVPLSATRD 444
+ F A PQ + N R Y Y N Y P +L+VPL A D
Sbjct: 53 YVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAPYD 97
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 641 PPGGAPSYQQPLYLQEPH 694
PP G P QQP +L+ PH
Sbjct: 223 PPSGFPHLQQPPFLRPPH 240
>03_01_0095 + 759530-760123
Length = 197
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 152 IINEVQAKKRGAASVERIAES--TWPARGLGTLGYSCGTAREHP 27
++ + ++ GAA + ES WPA G+G GY C A HP
Sbjct: 17 LLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCC-PAPPHP 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,578,177
Number of Sequences: 37544
Number of extensions: 467226
Number of successful extensions: 1513
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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