Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30229
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)                   28   6.8  
SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)                       28   6.8  
SB_47915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   9.0  

>SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 328 RIGMECPQTASENHDRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQTFHTPSFGDE 507
           R+GM   Q   E H ++   + ++K  E + VP+  ++  K     MND  +   + GD+
Sbjct: 24  RMGMTECQNTDEVHKKTTHRHGLWKHDEMITVPMMISQMMK---VVMNDDDYKEDNLGDD 80

Query: 508 D 510
           D
Sbjct: 81  D 81


>SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 633 PSCAGFIMPTAAQRGVIVCTEYAYSGLLIPAHAARVLKEYQIFVTK 496
           P C  +  P  A+ G+  C++Y   G       +++ + YQ  VTK
Sbjct: 22  PQCLDYRPPFKAREGLAFCSQYNAFGCCTRGQDSKISRRYQNLVTK 67


>SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)
          Length = 472

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -1

Query: 583 CVY*ICVFWTPDPGACCPCIKGISNL-RHQMK---ECEMS-DHSWRTHCSWRRE*RTGAL 419
           CV  I V W      C  C+  IS + R +++   EC +S    WR    +  E      
Sbjct: 131 CVVSIAVVWRVRVRFCVECVVSISRVWRVRVRFCVECVVSISRVWRVRVRFCVECVVSIS 190

Query: 418 RDFQVSCTYCTACMI 374
           R ++V   +C  C++
Sbjct: 191 RKWRVRVRFCVECVV 205


>SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)
          Length = 279

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 538 CCPCIKGISNLRHQMKECEMSDHSWRTHCSWRRE*RTGALRDFQVSC 398
           CC  IKG+ +LR+        DH W +  S R      +LRD++  C
Sbjct: 229 CCVTIKGLCSLRNDEWLSSFRDHEWLS--SLRDYEWLCSLRDYEWLC 273


>SB_47915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 580 HNYTTLRRSRHDESSTGRLGPTRWC 654
           H Y ++RR R++  S     P RWC
Sbjct: 36  HGYESIRRQRYELISRHGYEPNRWC 60


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 334 GMECPQTASENHDRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQTFHTPSFG 501
           G +CP T+    D       M++     E+   A + ++N+ ++ N Q+F TP  G
Sbjct: 784 GDDCPSTSQREDDNPVS--KMFQE----EIRARARKYSQNTGFSQNQQSFSTPEHG 833


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,773,952
Number of Sequences: 59808
Number of extensions: 527561
Number of successful extensions: 1659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)