Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30229
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16090.1 68417.m02439 hypothetical protein contains Pfam prof...    32   0.34 
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa...    30   1.8  
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa...    29   4.2  
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa...    29   4.2  
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa...    29   4.2  
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa...    28   5.6  
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    28   7.3  
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa...    27   9.7  

>At4g16090.1 68417.m02439 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 251

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 412 NLEVPLSATRDAKNSVYAMNDQTFHTPSFGDEDLIF 519
           N   P    +D+ + +Y+  D+ F+TPSFG   L+F
Sbjct: 165 NFNRPGGTHKDSGSVMYSKRDEKFYTPSFGGHFLVF 200


>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 214

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 377 HTSCTICTRDLKISKCPCPLLATP 448
           HT C +C+R+L +++  CPL   P
Sbjct: 183 HTFCRVCSRELWLNRGSCPLCNRP 206


>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 265

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 377 HTSCTICTRDLKISKCPCPLLAT 445
           HT C +C+R+L + +  CPL  T
Sbjct: 234 HTFCRLCSRELWVQRGNCPLCNT 256


>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 304

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 377 HTSCTICTRDLKISKCPCPLLAT 445
           HT C +C+R+L + +  CPL  T
Sbjct: 273 HTFCRLCSRELWVQRGNCPLCNT 295


>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 250

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 377 HTSCTICTRDLKISKCPCPLLAT 445
           HT C +C+R+L + +  CPL  T
Sbjct: 219 HTFCRLCSRELWVQRGNCPLCNT 241


>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|P27048 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Mus musculus}
          Length = 254

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 620 PAQDGLAPPGGAPSYQQPLYLQEPHTPVTTHS 715
           P++ G+ PPGGAP +  P +   P  P   H+
Sbjct: 221 PSRPGMPPPGGAPMFAPP-HPGMPPAPPNHHN 251


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 590 PRCAAVGMMNPAQDGLAPPGGAPSYQQPLYLQEPHTPVT 706
           P   A   + P   G  PPG  PS  + +Y+   HT VT
Sbjct: 33  PGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVT 71


>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile:  PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 377 HTSCTICTRDLKISKCPCPL 436
           HT C +C+R++ +++  CPL
Sbjct: 173 HTYCRVCSREIWMNRGTCPL 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,469
Number of Sequences: 28952
Number of extensions: 347057
Number of successful extensions: 972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)