Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30228
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   2.3  
UniRef50_A7EEP1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_Q9PQJ8 Cluster: Unique hypothetical; n=1; Ureaplasma pa...    34   4.0  
UniRef50_A2EZD8 Cluster: Putative uncharacterized protein; n=3; ...    33   6.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 208 WYLPARTHNRSYHQ 249
           WYLPARTH RSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A7EEP1 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 574

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = +2

Query: 140 LQRPPHPSNRNALLLHGRNRQGGGTYPRVLTTGPTTSN 253
           +Q PPHP N NA     R RQGG T P  L +  TTS+
Sbjct: 136 IQSPPHPHN-NAASNSPRFRQGGSTQPEPLLSLLTTSH 172


>UniRef50_Q9PQJ8 Cluster: Unique hypothetical; n=1; Ureaplasma
           parvum|Rep: Unique hypothetical - Ureaplasma parvum
           (Ureaplasma urealyticum biotype 1)
          Length = 1447

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +2

Query: 296 NLFEVITKSIPNLMKIGSMVWQRIEDKHTEH*SIYASLPVDVIKKTPHNEYSTKH-RDIC 472
           N+F+ I K IPNL+ + ++V Q ++       +I A +    +K T  N++  K+  DI 
Sbjct: 270 NIFDKILKQIPNLLYLQNIVDQSVDFLKV---NIEALINHQPLKNTTWNDFINKNVTDIS 326

Query: 473 RLCRLKIRYQTSEFTAHSNSRVV 541
            L  L   ++T+E T +  ++++
Sbjct: 327 ALSNLLEIFETNEITNNEWNQLI 349


>UniRef50_A2EZD8 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 728

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +2

Query: 278 KYDIAYNLFEVITKSIP-NLMKIGSMVWQR---IEDKHTEH*SIYASLPVDVIKKTPHNE 445
           K +++Y++F      +P  ++  G+  W+R   + D   +H  +  SL +D++ +    E
Sbjct: 420 KEEVSYDIFSEFNPQMPITILTNGAAAWERCVVLCDPQRKH-QVLKSL-IDLVIQANLRE 477

Query: 446 YSTKHRDICRLCRLK 490
           Y   + + CR+C +K
Sbjct: 478 YLITYLEACRICMMK 492


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,459,005
Number of Sequences: 1657284
Number of extensions: 14424251
Number of successful extensions: 32067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32056
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)