Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30228
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483...    28   6.4  
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724...    28   8.4  

>07_03_1601 -
           28047764-28047845,28048043-28048078,28048209-28048339,
           28048695-28048967,28049039-28049166,28049250-28049369,
           28049461-28049538,28049598-28049669,28049790-28049849,
           28050096-28050217,28052918-28053048,28053382-28053534,
           28053628-28053755,28053831-28053968,28054056-28054144,
           28055741-28055878,28056870-28057102
          Length = 703

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 272 IYKYDIAYNLFEVITKSIPNLMKI 343
           +YKYD+ YN+  + TK  P L  I
Sbjct: 257 LYKYDLQYNIAVIETKFFPGLRAI 280


>06_03_0500 +
           21470681-21470952,21471049-21471089,21472322-21472485,
           21472577-21472679,21472806-21472975,21473766-21474239
          Length = 407

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 341 IGSMVWQRIEDKHTEH*SIYASLPVDVIKKTPHNE 445
           +G + W+  E+  T+H   Y ++   VI K  H +
Sbjct: 95  VGGVAWETTEESFTKHFEKYGAISDSVIMKDKHTK 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,676,580
Number of Sequences: 37544
Number of extensions: 397967
Number of successful extensions: 812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)