Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30228
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              31   0.70 
SB_58734| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_45300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +2

Query: 206 GGTYPRVLTTGPTTSNSQVIIMIYKYDIAYNLFEVITKSIPNLMKIGSMVWQRIEDKHTE 385
           G   P+++T   TT     ++ +    I   LF    +  P +    S+V+++I  KH  
Sbjct: 698 GNDVPQIVTDKLTTGLFAQLVRVTL--IIAVLFTYPLQLFPVIQIAESLVFEKIRRKHKS 755

Query: 386 H*SIYASLPVDVIKKTPHNEYST 454
           H S   S P D I +     Y T
Sbjct: 756 HLSDIVSCPADAIGRQEVTNYQT 778


>SB_58734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 173 ALLLHGRNRQGGGTYPRVLTTGPTTSNSQVIIMIYKYDIAYNLFEVIT 316
           +++LH R+R G  T  R        S+  V+IM   +D+AY  +EV T
Sbjct: 22  SVILHQRSRNGRPT-TRYFVLNLAISDLLVLIMFIPFDLAYLEYEVWT 68


>SB_45300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +1

Query: 418 CHKENPTQRV*YKTQRYLSSV*TQNPVPNFRIYSSFKFTSR 540
           C KENP  +  Y  Q Y S+        N R YSS K  SR
Sbjct: 82  CIKENPIDKDQYNDQYYSSTKQVSRHQYNDRYYSSTKQVSR 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,955,450
Number of Sequences: 59808
Number of extensions: 467499
Number of successful extensions: 951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)