Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30228
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U80847-4|AAB37986.1|  112|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical
           protein T27C5.1 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 365 YVAIPLIQFSLNLV*ISLSLQISCMLYHIYI 273
           Y+ IPLI F L++V   L  Q+ C++Y+IYI
Sbjct: 209 YILIPLILFVLSVVGHYL-FQMGCLVYYIYI 238


>U80847-4|AAB37986.1|  112|Caenorhabditis elegans Hypothetical
           protein C17H11.5 protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 416 PREEMHKWINVPYVCPLYVAIPLIQFSL 333
           PR +++ W+ VP VCP      +I+FS+
Sbjct: 11  PRNKLNDWVGVPPVCPENDDGAIIEFSV 38


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 43  SPPGIKWLIEPIVIYIVNAPPTLRYKL*ALSIVTTAAPP 159
           +P   K  I P  +    APPT+R  +   ++ TT APP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,122
Number of Sequences: 27780
Number of extensions: 359934
Number of successful extensions: 827
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)