Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30228
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.18 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 528 FE*AVNSEVWYRILSLHRRQISLCFVLYSLCGVF 427
           FE + N++ W R+ SLH   +  C VL    G F
Sbjct: 79  FESSFNAQSWQRLTSLHELHVHGCKVLRIPEGAF 112


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 224 VLTTGPTTSNSQVIIMIYKYDIAYNLFEVITKSIPNLMKIGSMVWQRIEDK 376
           ++ T P  S  Q +    K D    +   +  +I +LMK+ S  W+ +  K
Sbjct: 707 LMKTNPPLSMLQRMAEFTKLDTNRQVNSAVKSTIQSLMKLKSPEWKDLAKK 757


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/53 (18%), Positives = 26/53 (49%)
 Frame = +3

Query: 435 HTTSIVQNTEIFVVCVDSKSGTKLQNLQLIQIHESYLQTNRN*LLSILDLDQY 593
           HT  +    ++ +  ++S S TKL  + L+Q  +    ++ +   ++  ++ Y
Sbjct: 500 HTLDVAWRRKVTIEILNSLSATKLSKIILMQFGDKLESSHDSFQAALRSIENY 552


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/53 (18%), Positives = 26/53 (49%)
 Frame = +3

Query: 435 HTTSIVQNTEIFVVCVDSKSGTKLQNLQLIQIHESYLQTNRN*LLSILDLDQY 593
           HT  +    ++ +  ++S S TKL  + L+Q  +    ++ +   ++  ++ Y
Sbjct: 538 HTLDVAWRRKVTIEILNSLSATKLSKIILMQFGDKLESSHDSFQAALRSIENY 590


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 456 FVLYSLCGVFFMTSTGRDA*MD*CSVCLSSIRCHTID 346
           ++LYSL  VF +   G     +  SV  ++  CH  D
Sbjct: 162 YLLYSLGQVFMLCIFGNRLIEESSSVMEAAYSCHWYD 198


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 643 NCMPNRFNRGLSR 605
           +C PN +NRG+ R
Sbjct: 72  SCGPNVYNRGVQR 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,366
Number of Sequences: 438
Number of extensions: 4593
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)