Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30227
         (815 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 282 TSTLRSSTMLSQELEPTKKPSSRSCARFPTMVSVP 386
           ++T+ +S+     + PT   +S SC   P+M   P
Sbjct: 10  STTMATSSNAMSPMTPTYSMNSMSCVSMPSMNCSP 44


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 329  DEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSGH 457
            D ++  +++C  +N+      A+Y Q  GK L SD+  D   H
Sbjct: 1818 DPKSEFKVVCYFTNW------AWYRQGVGKYLPSDIDPDLCTH 1854


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 715 SQCYQRILS*SSPQCLFRSKLRTRRR 638
           SQ   R+L  S P C +  + ++RR+
Sbjct: 394 SQEESRVLDLSKPGCSYTGEQKSRRK 419


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,060
Number of Sequences: 336
Number of extensions: 3389
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)