Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30227
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.8  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   3.2  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    27   4.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   7.4  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.4  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    25   9.7  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 305 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 433
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 568 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 690
           QWGTD ++  ++  TR+ +Q++  F + E      +  ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +2

Query: 362 LSNYGIRTISAFYEQLYGKSLESDLKGDTSGH-----FKRLCVSLCMANRDENQASM--K 520
           +   G   + A  E L  + L  +L+GD +       FK +C++  +  +++   S+  K
Sbjct: 331 IEKLGFEEVEARLELLCREELLYNLEGDFTFSKADLTFKEICLAFVLMEKEKELISVPSK 390

Query: 521 AQLKPMLKHWPPLVKV 568
           + +KP  KH+  L+K+
Sbjct: 391 SDIKP--KHYRKLLKI 404


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 394  ILRTTVRQEPGIGLKRRHVG 453
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 385 HIRILRTTVRQEPGIGLKR-----RHVGTLQEIVRVVVHGQSR 498
           H++ ++  V QE G  L R          LQE+VRVV+H   R
Sbjct: 325 HLQSIKAQVEQERGSRLGRLQELRNSFQQLQELVRVVLHENGR 367


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 494 RDENQASMKAQLKPMLKHWPP 556
           RDE Q   + +L+ M+K W P
Sbjct: 68  RDEKQKQQRERLRSMIKVWDP 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,981
Number of Sequences: 5004
Number of extensions: 57812
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)