Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30226
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 42 7e-05
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 33 0.057
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.53
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 27 3.8
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 27 3.8
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 27 3.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 5.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 5.0
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 5.0
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 6.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 6.6
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 26 6.6
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 8.7
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 42.3 bits (95), Expect = 7e-05
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 536 VPTYEVLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENS-TEPYTD 709
V Y+ +D R TL++ L + + +++++DL+ N+ H WF +S +S T P D
Sbjct: 73 VSDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSSKTNPKRD 132
Query: 710 YFIW 721
++ W
Sbjct: 133 WYFW 136
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 32.7 bits (71), Expect = 0.057
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 620 RVIVDLIPNYVFTNHTWFVQSENSTEPYTDYF 715
R I+D++ NY+F+ + V E E YTD+F
Sbjct: 456 RAILDILNNYIFSCPLFLVTPEELEEQYTDFF 487
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -3
Query: 442 TRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTS 269
TR SSY + S + + ++ +P+S S+++ ++ +S + K SS+ S+S
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSS 196
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = -3
Query: 463 ASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 284
++T S+P ++ L + + HS+ TQ T+S + F QK S A
Sbjct: 95 SNTFSAPLNATGNFSSANPASIDLAYLDLQKLLTLPDHSKETQEKTSSQRELFEQKSSVA 154
Query: 283 YFSTSSL 263
S ++
Sbjct: 155 SASKDNV 161
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 653 FTNHTWFVQSENSTEPYTDYFIWTKD 730
FT H W ++SE +E Y D W KD
Sbjct: 83 FTLHHWVLKSEVDSEAYED---WNKD 105
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 572 VCHVCRALRKSALGRTRPE 516
VC +C +L K+A+GR RP+
Sbjct: 102 VCGLCVSLLKNAVGRPRPD 120
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -3
Query: 664 MVGEHVVRNQINNHSYSDLLNFVEQNFEFVQCVTFVEHF----VSRHLDEHAL 518
MV + Q NH+Y+DLL +E + +HF ++R L++H+L
Sbjct: 1447 MVAIQHLNIQAVNHAYNDLLIEMEDYQSLQDSIENYDHFDAIALARRLEKHSL 1499
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -3
Query: 457 TNSS--PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 284
+NSS PT PSS S T+TA S T T + T SS
Sbjct: 458 SNSSVIPTSAPSSVSSFTSSNSSY-TTTLTA-------SNTTVTFTGTGTGSATATSSSP 509
Query: 283 YFSTSSLVIP 254
Y+S SS+++P
Sbjct: 510 YYSNSSIIVP 519
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -2
Query: 326 EQRPTQVHPERIVSILQYLLSRHPVNCRLLASSSIFASPF 207
EQ+ T + + +++ +++ NC++L +SS+ PF
Sbjct: 465 EQKNTIEFDAKFLGVVERYQNQYANNCKILKTSSVLPIPF 504
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 652 HVVRNQINNHSYSDLLNFVEQNFEFVQCVTFVEHFVSRHLDEHALN 515
H +N + + S S NF+EQN + V+ H+ S LDE L+
Sbjct: 425 HSKKNSVTSTSSSQFNNFLEQNQKAVRSARH-RHYAS--LDEQGLH 467
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -3
Query: 415 LGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVI 257
+G+G P + A+ P + S +T N+T S T ST + +
Sbjct: 150 VGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTV 202
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 327 VLFWVAWLCMLAGAIAVI 380
VL W AWLC +G + +
Sbjct: 278 VLIWFAWLCFNSGTLLTV 295
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 554 LDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENSTE 697
L+ ++ + K + N +KI ++ DL+P+ T WF E E
Sbjct: 125 LESKNLVKSIKSVKNPTRKI--YMLYDLVPSTELTGGPWFTDQELDVE 170
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +2
Query: 545 YEVLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFV----QSENSTEPYTDY 712
Y+ +D+ D I+ K I +RVI + + WF+ Q NS + Y+ +
Sbjct: 217 YDSIDELDFSVLNSIVSLDAKDIYIRVICSFVNTGFIDSTNWFLNSFNQRRNSLQLYSSW 276
Query: 713 FI 718
FI
Sbjct: 277 FI 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,720
Number of Sequences: 5004
Number of extensions: 54647
Number of successful extensions: 211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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