BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30226 (747 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 31 1.3 09_04_0092 + 14548110-14548306,14548891-14549029,14549698-145498... 29 3.9 04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 29 3.9 09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 5.2 08_02_1075 + 24149570-24149833,24150008-24150307 29 5.2 08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 29 5.2 03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 29 5.2 10_01_0197 + 2148109-2149551 28 6.9 04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 6.9 11_02_0052 + 7788655-7789850,7789921-7790011 28 9.1 05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 28 9.1 02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 28 9.1 01_01_0077 - 585670-585787,585921-586687 28 9.1 >10_08_0749 - 20282982-20283632,20284081-20284141,20284828-20284872, 20285293-20285672,20286382-20287050 Length = 601 Score = 30.7 bits (66), Expect = 1.3 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = -2 Query: 350 QPGHPEQHEQRPTQVHPERIVSILQYLLSRHPVNCRLLA 234 Q G E H RP + PER VSIL+ L H ++ R+ A Sbjct: 316 QAGMLESHPWRPQRGLPERAVSILRAWLFEHFLHPRMFA 354 >09_04_0092 + 14548110-14548306,14548891-14549029,14549698-14549815, 14549901-14550127 Length = 226 Score = 29.1 bits (62), Expect = 3.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 346 GCACSPGLLQSLYALPSAARPNPGHG 423 G SPG+L LY + RP+PG G Sbjct: 2 GVKPSPGVLDGLYGVQLGRRPSPGDG 27 >04_04_0613 + 26617677-26617963,26618726-26618786,26619598-26619832, 26619958-26620196,26620493-26620744,26620844-26621024, 26621810-26621898,26622200-26622273,26622365-26622443 Length = 498 Score = 29.1 bits (62), Expect = 3.9 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -2 Query: 443 DQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPERI 291 D R + P G GR + Y P +H Q H QH+Q P H + + Sbjct: 2 DPRARYPPGIGNGRGGNPNYYGRGPPPSQHQQ--HQHQHQQPPHPHHHQYV 50 >09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 Length = 883 Score = 28.7 bits (61), Expect = 5.2 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = -3 Query: 463 ASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 284 AS++S+ R P++ L + PH+ A +M A PA+ + T + F+ G S Sbjct: 654 ASSSSAAPRAPAAPLALHAPAPHIRAPSMAAPPPAAPRGRTMPPTTG--RYSFSYGGLSL 711 Query: 283 YFST 272 ++T Sbjct: 712 SYTT 715 >08_02_1075 + 24149570-24149833,24150008-24150307 Length = 187 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 93 LRFAEVRFGRPEFRNQLVND 34 LRFA V+FG PEF +ND Sbjct: 60 LRFAIVKFGHPEFAGLALND 79 >08_02_0523 + 18150425-18150629,18150822-18150881,18150882-18150967, 18151802-18151948,18152712-18152835,18152990-18153366 Length = 332 Score = 28.7 bits (61), Expect = 5.2 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 310 CVGRC-SCCSGWPGCACSPGLLQSLYAL 390 C+ C +CC GW C P L++ +AL Sbjct: 235 CLAGCRNCCYGWGVLDCLPASLEACFAL 262 >03_05_0350 + 23368111-23368219,23368519-23368526,23368650-23368658, 23368768-23368839,23368978-23369097,23369638-23370058, 23370131-23370285,23370461-23370625,23370822-23370825, 23371739-23371799,23371933-23372035,23372422-23372854, 23372978-23373120,23373608-23373740,23375567-23375576, 23375852-23375975,23376595-23377012,23377153-23377343, 23377569-23377811 Length = 973 Score = 28.7 bits (61), Expect = 5.2 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -2 Query: 380 NDCNSPGEHAQPGHPEQHEQRPT-QVHPERIVSILQYLLSRHPVNCRLLASSSIFASP 210 ++CN + E ++ PT +VH ++ +++ + S HPV ++ S++ P Sbjct: 238 DNCNKKMKTEHASSSEDDQETPTAEVHRMKVEEMVRAIHSNHPVFVAVMKKSNVTRQP 295 >10_01_0197 + 2148109-2149551 Length = 480 Score = 28.3 bits (60), Expect = 6.9 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -3 Query: 688 VLTLYEPGMVGE-----HVVRNQINNHSYSDLLNFVEQNFEFVQCVTFVE 554 VL + P VG+ HV N+I +S +L+ +N ++C TF E Sbjct: 193 VLPIIGPSRVGKRTLVAHVCNNEIVRSHFSSILHLNGENIMKMECETFTE 242 >04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077, 34512493-34513964,34514114-34514377,34514761-34514978, 34515759-34516030,34516190-34516559,34516578-34516797, 34516819-34518931,34518941-34519193,34519269-34519401, 34520597-34521114,34521207-34522115,34522195-34522368, 34522833-34522882,34523963-34524035,34524413-34524477, 34524736-34525522,34525622-34525878,34525989-34526109, 34526315-34526956 Length = 5320 Score = 28.3 bits (60), Expect = 6.9 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -2 Query: 443 DQRTEFVPCPGFGRAALGSA-YNDCNSPGEHAQPGHPEQH 327 D +T + G G LGS+ + DC PG+ P H +H Sbjct: 4700 DGQTSYPIRHGLGTTRLGSSIFIDCAMPGQPNMPRHQPRH 4739 >11_02_0052 + 7788655-7789850,7789921-7790011 Length = 428 Score = 27.9 bits (59), Expect = 9.1 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -3 Query: 598 VEQNFEFVQCVTFV-EHFVSRHLDEH 524 ++ + ++ CV F EHFV+R++D H Sbjct: 339 IKNDVDYYSCVCFGNEHFVARYIDRH 364 >05_04_0299 - 19958776-19958858,19958883-19959012,19960131-19960175, 19960252-19960370,19960450-19960543,19961824-19961985, 19962117-19962266,19962472-19962537,19962934-19962981, 19963654-19963866,19963953-19964078,19964155-19964232, 19964600-19964671,19965522-19965953,19966863-19966925, 19967497-19967898 Length = 760 Score = 27.9 bits (59), Expect = 9.1 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -3 Query: 721 PDEIISVGLSAVLTLYEPGMVGEHVVRNQINNHS 620 PDE ++ L ++L +Y+ G GE + + +NN S Sbjct: 198 PDEKVASDLVSMLNVYKQGSDGELGINDTVNNGS 231 >02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648, 282768-282923,283224-283349,283426-283560,283815-283942, 284037-284148,284233-284547,284655-284771,284871-285166, 285252-285783,287980-288082,288808-288881,288965-289062, 289340-289380,289977-290032,290170-290244,290377-290469, 290602-290850,290930-291002,291681-291766,291853-291938, 292067-292142,292280-292347,292430-292496,292570-292665, 292741-292843,293214-293309,293396-293466 Length = 2047 Score = 27.9 bits (59), Expect = 9.1 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -3 Query: 391 GARTMTA-IAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 272 G++++TA + + NT++ Q++ Q GSSA+ ST Sbjct: 147 GSQSLTAEVTDQDFFGGTSDQNTDTQQQQLEQSGSSAFDST 187 >01_01_0077 - 585670-585787,585921-586687 Length = 294 Score = 27.9 bits (59), Expect = 9.1 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +3 Query: 360 AGAIAVIVRAPKCGPPEPR 416 AGA++++VR P PP+P+ Sbjct: 168 AGAVSIVVRDPSLPPPKPK 186 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,787,133 Number of Sequences: 37544 Number of extensions: 386273 Number of successful extensions: 1296 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1296 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1980691104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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