Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30226
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 31 1.3
09_04_0092 + 14548110-14548306,14548891-14549029,14549698-145498... 29 3.9
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 29 3.9
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 5.2
08_02_1075 + 24149570-24149833,24150008-24150307 29 5.2
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 29 5.2
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 29 5.2
10_01_0197 + 2148109-2149551 28 6.9
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 6.9
11_02_0052 + 7788655-7789850,7789921-7790011 28 9.1
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 28 9.1
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 28 9.1
01_01_0077 - 585670-585787,585921-586687 28 9.1
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 350 QPGHPEQHEQRPTQVHPERIVSILQYLLSRHPVNCRLLA 234
Q G E H RP + PER VSIL+ L H ++ R+ A
Sbjct: 316 QAGMLESHPWRPQRGLPERAVSILRAWLFEHFLHPRMFA 354
>09_04_0092 +
14548110-14548306,14548891-14549029,14549698-14549815,
14549901-14550127
Length = 226
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 346 GCACSPGLLQSLYALPSAARPNPGHG 423
G SPG+L LY + RP+PG G
Sbjct: 2 GVKPSPGVLDGLYGVQLGRRPSPGDG 27
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 443 DQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPERI 291
D R + P G GR + Y P +H Q H QH+Q P H + +
Sbjct: 2 DPRARYPPGIGNGRGGNPNYYGRGPPPSQHQQ--HQHQHQQPPHPHHHQYV 50
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 463 ASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 284
AS++S+ R P++ L + PH+ A +M A PA+ + T + F+ G S
Sbjct: 654 ASSSSAAPRAPAAPLALHAPAPHIRAPSMAAPPPAAPRGRTMPPTTG--RYSFSYGGLSL 711
Query: 283 YFST 272
++T
Sbjct: 712 SYTT 715
>08_02_1075 + 24149570-24149833,24150008-24150307
Length = 187
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 93 LRFAEVRFGRPEFRNQLVND 34
LRFA V+FG PEF +ND
Sbjct: 60 LRFAIVKFGHPEFAGLALND 79
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 310 CVGRC-SCCSGWPGCACSPGLLQSLYAL 390
C+ C +CC GW C P L++ +AL
Sbjct: 235 CLAGCRNCCYGWGVLDCLPASLEACFAL 262
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 380 NDCNSPGEHAQPGHPEQHEQRPT-QVHPERIVSILQYLLSRHPVNCRLLASSSIFASP 210
++CN + E ++ PT +VH ++ +++ + S HPV ++ S++ P
Sbjct: 238 DNCNKKMKTEHASSSEDDQETPTAEVHRMKVEEMVRAIHSNHPVFVAVMKKSNVTRQP 295
>10_01_0197 + 2148109-2149551
Length = 480
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -3
Query: 688 VLTLYEPGMVGE-----HVVRNQINNHSYSDLLNFVEQNFEFVQCVTFVE 554
VL + P VG+ HV N+I +S +L+ +N ++C TF E
Sbjct: 193 VLPIIGPSRVGKRTLVAHVCNNEIVRSHFSSILHLNGENIMKMECETFTE 242
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 443 DQRTEFVPCPGFGRAALGSA-YNDCNSPGEHAQPGHPEQH 327
D +T + G G LGS+ + DC PG+ P H +H
Sbjct: 4700 DGQTSYPIRHGLGTTRLGSSIFIDCAMPGQPNMPRHQPRH 4739
>11_02_0052 + 7788655-7789850,7789921-7790011
Length = 428
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 598 VEQNFEFVQCVTFV-EHFVSRHLDEH 524
++ + ++ CV F EHFV+R++D H
Sbjct: 339 IKNDVDYYSCVCFGNEHFVARYIDRH 364
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 721 PDEIISVGLSAVLTLYEPGMVGEHVVRNQINNHS 620
PDE ++ L ++L +Y+ G GE + + +NN S
Sbjct: 198 PDEKVASDLVSMLNVYKQGSDGELGINDTVNNGS 231
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 391 GARTMTA-IAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 272
G++++TA + + NT++ Q++ Q GSSA+ ST
Sbjct: 147 GSQSLTAEVTDQDFFGGTSDQNTDTQQQQLEQSGSSAFDST 187
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 360 AGAIAVIVRAPKCGPPEPR 416
AGA++++VR P PP+P+
Sbjct: 168 AGAVSIVVRDPSLPPPKPK 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,787,133
Number of Sequences: 37544
Number of extensions: 386273
Number of successful extensions: 1296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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