Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30226
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  41   0.001
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       35   0.081
SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)        33   0.25 
SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08)       33   0.25 
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    32   0.57 
SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)       31   0.75 
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)                    31   0.75 
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   4.0  
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              29   4.0  
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                28   9.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +2

Query: 569 TLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQS-ENSTEPYTDYFIW 721
           T+++F+ L   I   G+++++D +PN+    H WF++S  N   P  +++IW
Sbjct: 97  TMEDFESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYIW 148


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 515 VQGVFVQVPTYEVLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSE-NS 691
           +  VF +    +V +    +++F+ L  K     +RVIVD +PN+    + WF +S  N 
Sbjct: 687 IGAVFSEEDLQDVNNALGKMEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEESSVNK 746

Query: 692 TEPYTDYFIW 721
           T    ++++W
Sbjct: 747 TNSKRNWYVW 756


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 316 GRCSCCSGWPGCACSPGLLQSLYALPSAARP 408
           GRCSC +GW G +C+       Y +   ARP
Sbjct: 685 GRCSCGTGWTGPSCNASCSAGRYGINCVARP 715


>SB_54283| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.4e-13)
          Length = 490

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = -2

Query: 458 DQLQSDQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQH---EQRPTQVHPERIV 288
           ++ Q D+RT+      +    + SA +     G+     H   +   E+  + V+P  +V
Sbjct: 218 ERYQGDERTQETDTFSYEENRISSAPHSSTEQGDFPSK-HESSYPRVEKNVSYVYPSNVV 276

Query: 287 SILQYL--LSRHPVNCRLLASSSIFASPFLW 201
           S++     L  H V+CR+    S+   PF W
Sbjct: 277 SLVGVTGTLDAHVVSCRVRVVRSLQGFPFAW 307


>SB_20979| Best HMM Match : ATP-gua_PtransN (HMM E-Value=5.6e-08)
          Length = 322

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = -2

Query: 458 DQLQSDQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQH---EQRPTQVHPERIV 288
           ++ Q D+RT+      +    + SA +     G+     H   +   E+  + V+P  +V
Sbjct: 209 ERYQGDERTQETDTFSYEENRISSAPHSSTEQGDFPSK-HESSYPRVEKNVSYVYPSNVV 267

Query: 287 SILQYL--LSRHPVNCRLLASSSIFASPFLW 201
           S++     L  H V+CR+    S+   PF W
Sbjct: 268 SLVGVTGTLDAHVVSCRVRVVRSLQGFPFAW 298


>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -2

Query: 470  FDGIDQLQSDQRTEFVPCPGFGRAALGSAYNDCNSPGEHA-QPGHPEQHEQRPTQVHPER 294
            F   D+L S +    +    +    LG  YND N+    A  P H   H Q PT+ +   
Sbjct: 933  FSSGDELDSGKGDSSIASSPYTSHTLGRRYNDHNNHSHTAFNPHHTMNHTQNPTRHNKYP 992

Query: 293  IVSI 282
            +V+I
Sbjct: 993  VVTI 996


>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
          Length = 573

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 344 GHPEQHEQRPTQVHPERIVSILQYLLSRHPVNCRLLASSSIFASPFLW 201
           G+  +   RPTQ H   + +    +   + VNCR ++S ++F+ PF W
Sbjct: 311 GYSAESLCRPTQ-HSTMVFTTFILMQLFNEVNCRRVSSRNVFSGPFDW 357


>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
          Length = 262

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = -3

Query: 451 SSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 272
           +SPT GP  +  L     +   +T   I P   H Q+ QNNTN ++ K ++K  S   ST
Sbjct: 202 TSPTIGPKHHQQLAQNITNNRPKTSPTIGP-KHHQQSAQNNTN-NRPKTSRKYMS--IST 257

Query: 271 SS 266
           SS
Sbjct: 258 SS 259


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/95 (29%), Positives = 40/95 (42%)
 Frame = -2

Query: 449 QSDQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPERIVSILQYL 270
           Q   RT   P P +G A      N   S  EH  PGH  Q          E+I S    +
Sbjct: 160 QLRMRTCDNPAPAYGGADCPGPANKTRSCNEHPCPGHSFQ----------EQISSSSNTV 209

Query: 269 LSRHPVNCRLLASSSIFASPFLWSPTTYFASDMST 165
           L++ P   R++A SS   SP  +  +   +S ++T
Sbjct: 210 LTQWPQTSRIIAFSSSEYSPSSYWSSRDVSSSLTT 244


>SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 325 SCCSGWPGCACSPGLLQSLYALPSAARPNP 414
           S C G PG  C      S+YA+ S  +P P
Sbjct: 73  SACKGDPGIICGGPYRNSIYAVESTVKPPP 102


>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 319 RCSCCSGWPGCACSPG---LLQSLYALPSAARPNPGH 420
           RC+C SGW G +C  G      + Y +      NPG+
Sbjct: 68  RCNCMSGWQGLSCEVGCGSCHPNAYCMMDKCVCNPGY 104


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +1

Query: 316 GRCSCCSGWPG--CACSPG 366
           G C C  GW G  C CSPG
Sbjct: 245 GTCQCKPGWTGIDCECSPG 263


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 267 EEVLKYADDPFWVNLRWSLF--VLFWVAWLCMLAGAIAVIVRA 389
           E +LKY D+       W     V F++A LC +AG +AV+ +A
Sbjct: 347 ECLLKYTDNVIGTFKYWFFIHSVFFFLAILCSIAGWVAVVSKA 389


>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 316 GRCSCCSGWPGCACS 360
           GRC C  GW G ACS
Sbjct: 374 GRCDCKPGWYGSACS 388


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 413 GFGRAALGSAYNDCNSPGEHAQP--GHPEQHEQRPTQVHPERIVSILQYLLSRHPVN 249
           G  RA     Y    +P  + QP  GHP  + Q P   +P+  V   QY   + PVN
Sbjct: 664 GTTRAYPPHPYAQVPAPCGNVQPQHGHPGMYPQHPQGSYPQYHVPQQQYPGQQQPVN 720


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 721 PDEIISVGLSAVLTLY-EPGMVGEHVVRNQINNHSYSDLLNFVEQNFEF 578
           PDE+  VGL A+  LY E   +   +  N+ N  + ++ +  + Q+  F
Sbjct: 398 PDEVYQVGLDALDKLYLEALKIAREITGNESNETAKAEFIKMLNQSEMF 446


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 473  WFDGIDQLQSDQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPER 294
            W +G    Q+D  T+F   P  GR     +Y++   P   +QP   E       +V P  
Sbjct: 1176 WIEGWRTYQTDDSTQFTESPTAGRCQ--RSYSEF-YPTTFSQPSSRESRSDMRVEV-PSA 1231

Query: 293  IVSILQ 276
            +VS L+
Sbjct: 1232 LVSALK 1237


>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = -2

Query: 446 SDQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPERIVSILQYLL 267
           SD+ TE   C     A +  + +   S G+   PG  +  +    +  PE  + ++ + +
Sbjct: 353 SDEYTELATCEQHEDAPMSKSLDSDQSTGQDKTPGFSDCRKDAKLEKDPEESLLLICWKV 412

Query: 266 SRHPVNCRLLASSSIFASPF 207
                 C  +A++S++ S F
Sbjct: 413 FPRFTYC-YIAATSLWLSKF 431


>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 310 CV-GRCSCCSGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMPSNHKIY 483
           C+ G C C +G+ G           + +PSAA   P   +    + D   + P N+ IY
Sbjct: 563 CIHGHCKCRAGYIGTGYECMKAAIYHVIPSAAFARPAPPSPPQAYMDVLTASPQNYGIY 621


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,745,922
Number of Sequences: 59808
Number of extensions: 444087
Number of successful extensions: 1681
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)