Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30224X
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0854 - 21905054-21906308,21906396-21907300                       31   0.77 
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    29   1.8  
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969...    27   9.5  

>08_02_0854 - 21905054-21906308,21906396-21907300
          Length = 719

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 129 EISAPTTSNQTRLITTKKHYFHIVKPVVAAIQFAIL 22
           E++   TS   R   T KHY+H+V+  +AAI  AIL
Sbjct: 583 EVNERETSTHRRHKVTNKHYYHVVEIYLAAID-AIL 617


>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 175 QRTQRCLIS*TRLVRGNISPYYEQPDATNYD*KTLFSHS 59
           Q  QRC     R VRG +  +YEQP AT  D  T+   S
Sbjct: 783 QEAQRCFED-CRRVRGLVDEWYEQPAATVVDWVTIDGQS 820


>01_01_1205 -
           9693702-9694517,9694591-9695076,9697014-9697095,
           9697876-9698051,9698326-9698580
          Length = 604

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 304 YDPSLVILILKYKRLRARPILDWIDSDLFPSRYRLA*NG 420
           Y PS+ IL +    L+     DW  SD  P+R+ L   G
Sbjct: 507 YRPSMPILSVVVPELKQTDSFDWTCSDEAPARHSLIVRG 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,785,730
Number of Sequences: 37544
Number of extensions: 176205
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)