BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30223 (502 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 1.6 SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 27 1.6 SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.8 SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 26 2.8 SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 25 4.8 >SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 1018 Score = 27.1 bits (57), Expect = 1.6 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +3 Query: 36 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 146 ESI+ + V FK+R+D N E F EL +Q F C Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624 >SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosaccharomyces pombe|chr 1|||Manual Length = 648 Score = 27.1 bits (57), Expect = 1.6 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 395 CFLWNWRGTARTGLLPPQYKQL 330 C W W+ R +L PQY QL Sbjct: 164 CVEWLWQSIQRNAVLEPQYFQL 185 >SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 398 Score = 26.2 bits (55), Expect = 2.8 Identities = 12/37 (32%), Positives = 17/37 (45%) Frame = +3 Query: 138 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTV 248 +C G+ YGQ C S++S AG N T+ Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTI 338 >SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex beta subunit Tfg2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 307 Score = 26.2 bits (55), Expect = 2.8 Identities = 18/53 (33%), Positives = 20/53 (37%) Frame = +2 Query: 287 LYQKWNKPIAGVALGVACIEVVGALFALCLANSIRNMDRRSRY*YFVHYKLVR 445 L KWN A + C+ V L L NS N D Y V K VR Sbjct: 41 LMDKWNSIPEDDAANLGCVRVKNDEIQLLLQNSPENADVPKIYNLRVMNKFVR 93 >SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharomyces pombe|chr 1|||Manual Length = 347 Score = 25.4 bits (53), Expect = 4.8 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Frame = +3 Query: 75 RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 233 R D+ +++ +AVF EL + +FE + + + ES +KKSI +TF G Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,736,466 Number of Sequences: 5004 Number of extensions: 31034 Number of successful extensions: 91 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 91 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 198176188 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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