Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30223
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   1.6  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.8  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    26   2.8  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   4.8  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 36  ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 146
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 395 CFLWNWRGTARTGLLPPQYKQL 330
           C  W W+   R  +L PQY QL
Sbjct: 164 CVEWLWQSIQRNAVLEPQYFQL 185


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 138 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTV 248
           +C G+     YGQ      C    S++S  AG N T+
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTI 338


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = +2

Query: 287 LYQKWNKPIAGVALGVACIEVVGALFALCLANSIRNMDRRSRY*YFVHYKLVR 445
           L  KWN      A  + C+ V      L L NS  N D    Y   V  K VR
Sbjct: 41  LMDKWNSIPEDDAANLGCVRVKNDEIQLLLQNSPENADVPKIYNLRVMNKFVR 93


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 75  RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 233
           R D+ +++  +AVF EL  + +FE    +      +    + ES  +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,466
Number of Sequences: 5004
Number of extensions: 31034
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)