Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30223
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     32   0.23 
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192           31   0.52 
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    31   0.69 
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   4.8  
01_05_0698 + 24376193-24376708                                         28   4.8  
09_04_0619 - 19001350-19001359,19001737-19001800,19001955-190020...    27   8.5  
07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425           27   8.5  
01_06_0012 + 25575196-25575198,25575769-25575945,25576034-255760...    27   8.5  

>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 186 PESCCVKKSILSTFAGNNCTVD 251
           P SCCV+K I+S F   NCT D
Sbjct: 53  PASCCVRKIIVSNFLPLNCTKD 74


>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
          Length = 283

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 251 RPNPGCGPKI--GELYQKWNKPIAGVALGVACIEVVGALF 364
           RP P CGP+   G   Q+W       + G   +E++GALF
Sbjct: 120 RPRPRCGPRARSGVAAQQWRHGRTVASEGRQSVELIGALF 159


>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 254 PNPGCGPKIGELYQKWNKPIAGVALGVACIEVVG 355
           P+   G  + ++   W+KPI  ++LG  CI ++G
Sbjct: 231 PSDMLGGHVDDMEADWSKPIVSISLGCKCIFLLG 264


>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 443  VPVYNVQNISSVTFCPCFLWNWRGTARTGLLPPQYKQLREQRRL 312
            + + +++ +SS+   P F+ ++  T + G LPP    LR   RL
Sbjct: 1434 ISISSLEMLSSLVSPPIFITSFSLTGKLGSLPPWVASLRSVSRL 1477


>01_05_0698 + 24376193-24376708
          Length = 171

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 308 PIAGVALGVACIEVVGALFALCLANSIRN 394
           P+AGV +  A +  V ALF  CLA  +R+
Sbjct: 126 PVAGVLVMGADVAGVSALFGFCLAEYLRH 154


>09_04_0619 -
           19001350-19001359,19001737-19001800,19001955-19002099,
           19002434-19002917,19003175-19003260,19003417-19003484,
           19003565-19003709,19004561-19004677
          Length = 372

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 230 GEGREDALLDATGLGQRELAVVDSASVT 147
           G G+E+  L+ATG+   E+ + D+  +T
Sbjct: 34  GAGQEELGLEATGIESNEIKIADTTEMT 61


>07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425
          Length = 370

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 354 PTTSIQATPRATPAIGLFHFW 292
           PTT+  ++P + PAIG  H+W
Sbjct: 80  PTTTAASSPFSPPAIGSPHWW 100


>01_06_0012 +
           25575196-25575198,25575769-25575945,25576034-25576078,
           25576164-25576371,25576685-25576875,25577078-25577473
          Length = 339

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 224 LRRQQL-HGRRPNPGCGPKIGELYQKWNKPIAGVALG 331
           LR  Q+ H R  NP C    GELY     PIA + LG
Sbjct: 289 LRPVQISHYRLNNPFCWQAFGELYTPTVPPIACLHLG 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,097,946
Number of Sequences: 37544
Number of extensions: 230844
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)