Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30223
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         34   0.057
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)      34   0.057
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                30   0.93 
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            29   2.8  
SB_28188| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_4913| Best HMM Match : CBF (HMM E-Value=2.9)                        28   3.8  
SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8)                  28   3.8  
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)                 28   5.0  
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_54514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_49793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        27   8.7  
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 311 IAGVALGVACIEVVGALFALCLANSIRN 394
           I GVALG+A  +++G  F+ CLA+++ N
Sbjct: 351 IGGVALGLAVFQLIGIAFSCCLASTLHN 378


>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
          Length = 211

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +3

Query: 30  IKESIMDGVGVLFKKRSDANADEAAEAVFSELQRQFECCGNTGAINY-------GQFTLP 188
           +K+ I   +    K    ++  +     F  LQ + +CCG  G +++       G  T+P
Sbjct: 122 VKDEIESDLTKALKGDYGSSGQDGVTKAFDALQEKQKCCGVNGYLDWKASKKYNGTSTVP 181

Query: 189 ESCCVKKS 212
           +SCCV K+
Sbjct: 182 DSCCVVKA 189


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 3   VLLFTYGESIKESIMDGVGVLFKKRSDANADEAAEAVFSELQRQFECCGN 152
           VL + Y E I++++   +     +   +  D    A+  E+ R F+CCGN
Sbjct: 107 VLAYVYRERIEKNLHGDIRSTMNEYHLSGHDAVTRAI-DEIHRDFKCCGN 155



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 311 IAGVALGVACIEVVGALFALCLANSIRNM 397
           I+G  + +A I+++G +FA CL   IR +
Sbjct: 218 ISGFGIWIAVIQLMGIIFATCLCCHIRTI 246


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
 Frame = +3

Query: 105 EAVFSELQRQFECCGNTGAIN---YGQFTL---PESCCVK 206
           +A    +Q  FECCG  G  +   YGQ      P SCC K
Sbjct: 484 KAAIDAMQMDFECCGAKGPSDWTFYGQMKYKAGPGSCCGK 523


>SB_28188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 158 RYQLRPVHVARVLLRQEEHPLYLRRQQLHGRRPNPGCGPKI 280
           RY+ R +H++ VL   ++      ++   G+R NPGC P +
Sbjct: 14  RYRCRRLHMSDVLFEWDQ------KRYKEGKRLNPGCSPSL 48


>SB_4913| Best HMM Match : CBF (HMM E-Value=2.9)
          Length = 328

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 45  MDGVGVLFKKRSDANADEAAEAVFSELQR 131
           + G+G++FK+R+  N       +F ELQR
Sbjct: 55  LKGLGLMFKQRTGRNLPMTHPVIFDELQR 83


>SB_32709| Best HMM Match : Spectrin (HMM E-Value=8.8)
          Length = 230

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 45  MDGVGVLFKKRSDANADEAAEAVFSELQR 131
           + G+G++FK+R+  N       +F ELQR
Sbjct: 55  LKGLGLMFKQRTGRNLPMTHPVIFDELQR 83


>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
          Length = 669

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
 Frame = +3

Query: 84  ANADEAAEAVFSELQRQFECCGNT-GAINYGQF---------TLPESCCVKKS 212
           +N ++A +AV    Q  F+CCG T G  ++            T+PESCC KK+
Sbjct: 528 SNKEKATKAV-DRAQSIFKCCGATQGPKDWANTAWAKSNTNQTVPESCCKKKA 579


>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
 Frame = +3

Query: 3   VLLFTYGESIKESIMDGVGVLFKKRSDANADEAAEAVFSELQRQFECCGNTGAINYGQ-- 176
           V +F + + ++  I++ +     K  D NAD   + +   +Q++F+CCG  G  ++ +  
Sbjct: 95  VFVFVFQDKVEAVIVEKLQTAVTKYRD-NAD--LQNLIDGVQQEFKCCGAKGINDWDKNI 151

Query: 177 -FT----------LPESCCVKKSI 215
            F           +P SCC+K +I
Sbjct: 152 YFNCSSPGSEACGVPYSCCIKDTI 175


>SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1100

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 428 VQNISSVTFCPCFLWNWRGTARTGLL 351
           ++ I   T  PCF WN +G     LL
Sbjct: 829 LREIGPDTLIPCFTWNLKGNTNVNLL 854


>SB_54514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 CGPKIGELYQKWNKPIAGVALGVACIEVVGALFA 367
           C  K+ +L Q+ +KP   + +GV C E + A+ A
Sbjct: 81  CFIKVVQLVQQASKPQEAIFVGVGCFESMTAVLA 114


>SB_49793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 170 RPVHVARVLLRQEEHPLYLRRQQLH-GRRP 256
           RP HVAR       HP ++ R+  H  RRP
Sbjct: 18  RPYHVARRPYHMARHPYHVARRLYHMARRP 47


>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 158 RYQLRP-VHVARVLLRQEEHPLYLRRQQLHGRRP 256
           R+  RP +H  R  L +    L+ RR +LH RRP
Sbjct: 157 RHTRRPRLHTRRPRLHRRRTRLHTRRPRLHTRRP 190


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 182 VARVLLRQEEHPLYLRRQQLHGRRPNPGCGPKIGELYQK 298
           V + LL QE+  LY+  +Q+  R+P P    ++  +YQ+
Sbjct: 518 VEKELLIQEKEKLYMELKQILARQPGPEVAEQL-SIYQQ 555


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 218  LYLRRQQLHGRRPNPGCGPKIGELYQKWNKPIAGVALGVACIEVVGALFALCLANSIRN- 394
            LYL +    G   N       G  Y+ W      V  G +C+ V+    A  L+N++RN 
Sbjct: 903  LYLLKAHREGSETNTIAYVVGGSRYETWQHVYTAVTRGRSCVYVIHDPNA--LSNAVRNE 960

Query: 395  -MDRRSRY*YFVHYKLVRLKRR 457
             + R++R   F+   + + + R
Sbjct: 961  PIKRQTRLAEFLKTMIAQNRER 982


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,271
Number of Sequences: 59808
Number of extensions: 250445
Number of successful extensions: 716
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)