Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30223
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    36   0.022
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    30   0.82 
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    29   1.4  
U64853-3|AAB04976.1|  565|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U52003-7|AAM97989.1|  555|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +3

Query: 105 EAVFSELQRQFECCGNTGAINYGQF-TLPESCCVKK 209
           E+ + +  + FECCG T + ++  F T+P+SCC+++
Sbjct: 132 ESAWDKTHQLFECCGVTNSSDWLTFTTIPDSCCIEE 167



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 260 PGCGPKIGELYQKWNKPIAGVALGVACIEVVGALFALCLANSI 388
           PGC   + +   K    + G+   +A I++VG  FA CL+ SI
Sbjct: 181 PGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGVCFACCLSKSI 223


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 111 VFSELQRQFECCGNTGAINYGQF 179
           +   +QR++ CCG  GAI+YG F
Sbjct: 276 IADRVQRRYCCCGYNGAIDYGFF 298


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 123 LQRQFECCGNTGAINYGQF--TLPESCCVK 206
           LQ  F CCGN G  ++  F   +P SC ++
Sbjct: 200 LQTAFRCCGNAGCSDFRVFRQDIPRSCDIR 229


>U64853-3|AAB04976.1|  565|Caenorhabditis elegans Hypothetical
           protein K11G9.1 protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 221 YLRRQQLHGRRPNPGCGPKIGELYQKWNKPIAG 319
           YL+ + L G   N  CGP +G LY+  +K + G
Sbjct: 7   YLKPEPL-GTVLNTSCGPVLGNLYRHGDKEVHG 38


>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 328 ESNAGYRLVPFLVELADLGTAAGIRASTVQLLPAKVERMLFLTQ-QDS 188
           E   G+    FL++LA  GTAA +  + V    A +ER+  L Q QD+
Sbjct: 15  EDKKGFDTRKFLIDLASGGTAAAVSKTAV----APIERVKLLLQVQDA 58


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 328 ESNAGYRLVPFLVELADLGTAAGIRASTVQLLPAKVERMLFLTQ-QDS 188
           E   G+    FL++LA  GTAA +  + V    A +ER+  L Q QD+
Sbjct: 15  EDKKGFDTRKFLIDLASGGTAAAVSKTAV----APIERVKLLLQVQDA 58


>U52003-7|AAM97989.1|  555|Caenorhabditis elegans Hypothetical
           protein ZK381.5a protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 81  DANADEAAEAVFSELQRQFECCGNTGAINYGQFTLPESCCVKK 209
           D NA+EA      E  R+ EC G +G + Y  F      C K+
Sbjct: 114 DLNAEEADTLRMFERTRKTECLG-SGVVQYAPFDTKCEKCPKR 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,881,842
Number of Sequences: 27780
Number of extensions: 182028
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)