Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30223
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    42   4e-06
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   0.77 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 41.9 bits (94), Expect = 4e-06
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +2

Query: 263 GCGPKIGELYQKWNKPIAGVALGVACIEVVGALFALCLANSIRNMDRR 406
           GC   + +  +        VA+ +A +E++G + ALCLANSI+N +RR
Sbjct: 181 GCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAERR 228



 Score = 28.7 bits (61), Expect = 0.036
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 123 LQRQFECCGNTGAINYGQFTLPESCC 200
           +Q+  +CCG     +Y    +P SCC
Sbjct: 139 IQKNLQCCGVHSLSDYNDKPIPASCC 164


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 69  KKRSDANADEAAEAVFSELQRQ 134
           +KR DA  DE+ EA+F  + RQ
Sbjct: 292 EKRDDAK-DESVEAIFQSILRQ 312


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 33  KESIMDGVGVLFKKRSDANADEAAEAVFSELQR 131
           K S+M   G+  +     + DE    VFS LQR
Sbjct: 96  KRSLMGAQGLSIRGLQINHEDETIRPVFSTLQR 128


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 296 KWNKPIAGVALGVACIEVVGALFALCL 376
           +WN   A     ++C+ +V  +   CL
Sbjct: 510 RWNSAFAIAPAVISCLGIVATMAVACL 536


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +2

Query: 296 KWNKPIAGVALGVACIEVVGALFALCL 376
           +WN   A     ++C+ +V  +   CL
Sbjct: 600 RWNSAFAIAPAVISCLGIVATMAVACL 626


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 303 FHFW*SSPILGPQP 262
           F FW S  ++GP+P
Sbjct: 26  FDFWKSRGVVGPKP 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,963
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)