Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30223
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    29   1.8  
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    29   1.8  
At3g21880.1 68416.m02759 zinc finger (B-box type) family protein...    29   1.8  
At1g55610.1 68414.m06365 protein kinase family protein contains ...    28   3.1  
At5g15030.1 68418.m01762 paired amphipathic helix repeat-contain...    27   9.4  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    27   9.4  

>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 126 QRQFECCGNTGAINYGQFTLPESCCVKKSILSTFAGN 236
           Q ++ECC        G+   P S CV +S+L TFA N
Sbjct: 260 QGEWECCE-------GEVAFPRSQCVMESVLYTFANN 289


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 126 QRQFECCGNTGAINYGQFTLPESCCVKKSILSTFAGN 236
           Q ++ECC        G+   P S CV +S+L TFA N
Sbjct: 260 QGEWECCE-------GEVAFPRSQCVMESVLYTFANN 289


>At3g21880.1 68416.m02759 zinc finger (B-box type) family protein
           contains similarity to zinc finger protein GB:BAA33206
           from [Oryza sativa]
          Length = 364

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 180 TLPESCCVKKSILSTFAGNNCTVDARIPAAVPRSASSTRNG 302
           T+P    + K+  S+F G+N TVD  + A+ P    +   G
Sbjct: 211 TVPNCLLIDKTNTSSFTGSNFTVDKALEASPPGQQMNINTG 251


>At1g55610.1 68414.m06365 protein kinase family protein contains
           Prosite:PS00107: Protein kinases ATP-binding region
           signature
          Length = 1166

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 180 TLPESCCVKKSILSTFAGNNCTVDARIPAAVPR 278
           T+PE  CVK   L T   NN  +   IP ++ R
Sbjct: 465 TIPEGVCVKGGNLETLILNNNLLTGSIPESISR 497


>At5g15030.1 68418.m01762 paired amphipathic helix repeat-containing
           protein low similarity to transcriptional repressor
           SIN3B [Mus musculus] GI:2921547; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 271

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 203 QEEHPLYLRRQQLHGRRPNPGCG 271
           Q +HP+   R +L G+ P PG G
Sbjct: 164 QNQHPVGSPRNELQGQSPKPGNG 186


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 9   LFTYGESIKESIMDGVG-VLFKKRSDANADEAAEAVFSELQRQFECCGNTGAI 164
           +F +GESI + ++ G G  L     DA   +A E+    L  Q   CG   A+
Sbjct: 249 VFVWGESISDGVLSGTGNSLNSTTEDALLPKALESTI-VLDAQNIACGKCHAV 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,304,405
Number of Sequences: 28952
Number of extensions: 169719
Number of successful extensions: 542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)