Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30221
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    56   6e-09
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   2.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.2  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   7.5  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   7.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   7.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   7.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.9  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 28/44 (63%), Positives = 29/44 (65%)
 Frame = +1

Query: 376 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 507
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSM 73



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +3

Query: 495 RSINAVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 620
           +S+N++ RF  DG+ I  + TP  L+ME+GD IE   +Q GG
Sbjct: 71  KSMNSL-RFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 498 SINAVVRFRFDGQPINENDTPTSLEMEEGDTIEV 599
           S +  +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 370 SFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 681  LIWTHWRWSILKIIKFTLGTLLR 613
            L++ H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +1

Query: 265 CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 420
           CH R  L  QI N++   S++  +     F   IN+K    A + K ++ HI +   G+ 
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184

Query: 421 NAIVQFKIKKHTPLRKLMNAYCDR 492
           NA+V+ KI K   ++  +   CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 177 NVHLTETQKEKAKQYTSECVKESGVSTEVINAAK 76
           N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 17  NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 474 HQFPERCVFLYFELYNCV 421
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 441  FELYNCVILT*YFQINVFVFSLLFI 367
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 474 HQFPERCVFLYFELYNCV 421
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 320 SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 433
           +F+   +  +LIS +L+K  EK+N L  K+ V I  LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,074
Number of Sequences: 5004
Number of extensions: 62815
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)