Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30221
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532     56   3e-08
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782     56   3e-08
07_03_0990 + 23173868-23174200                                         37   0.017
07_03_0989 + 23161020-23161412                                         37   0.017
07_03_0988 + 23160028-23160360                                         33   0.28 
01_04_0034 + 15318509-15319567                                         33   0.28 
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308...    29   3.4  
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           29   6.0  

>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
          Length = 100

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +1

Query: 376 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM 507
           +G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + M
Sbjct: 15  EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDM 58



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +3

Query: 492 SRSINAVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 620
           S  +NA+  F FDG+ +    TP  LEME+GD I+    QTGG
Sbjct: 55  SVDMNAIA-FLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96


>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
          Length = 101

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
 Frame = +1

Query: 367 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMR 510
           DEKK     G   HINLKV GQD   V F+IK+ T L+KLMNAYCDR  + ++
Sbjct: 8   DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIK 60



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = +3

Query: 513 VRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 620
           + F FDG+ +N   TP  LEME+GD I+    QTGG
Sbjct: 62  IAFLFDGRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97


>07_03_0990 + 23173868-23174200
          Length = 110

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +3

Query: 516 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 626
           RF +DG+ ++   TP  L+ME+GD ++ +++  GG +
Sbjct: 74  RFLYDGRRLSGWQTPAELDMEDGDEVDFFEELIGGAA 110


>07_03_0989 + 23161020-23161412
          Length = 130

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 516 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVS 626
           RF FDG+ +    TP  L+ME+GD +  +++  GG +
Sbjct: 82  RFLFDGRRLRGWQTPAELQMEDGDEVNFFEELIGGAA 118


>07_03_0988 + 23160028-23160360
          Length = 110

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 519 FRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 620
           F FDG  +  + TP  LEM +GDT++ +    GG
Sbjct: 64  FLFDGIRLKGDMTPMGLEMVDGDTVDFFPVMIGG 97


>01_04_0034 + 15318509-15319567
          Length = 352

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 525 FDGQPINENDTPTSLEMEEGDTIEVYQQQTG 617
           ++G+ + ++ TP  L++E+GDTI    +Q G
Sbjct: 322 YEGRRVQDSQTPDDLKLEDGDTIHAIARQVG 352


>01_05_0651 +
           23930455-23930457,23930543-23930636,23930764-23930849,
           23930930-23931108,23932275-23932482,23932808-23932975
          Length = 245

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 507 AVVRFRFDGQPINENDTPTSLEMEEGDTIEV 599
           A + F FDG  ++   TP  L +E+ D +EV
Sbjct: 210 ADLTFAFDGDKVDAESTPEDLGLEDEDMVEV 240


>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 186 GADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNK 16
           G D ++L E  +    +     V+       + NAAK   Y E K   K ++C F K
Sbjct: 45  GEDKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCEFGK 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,784,624
Number of Sequences: 37544
Number of extensions: 366100
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)