Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30218
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.5  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 448 EIIWTYLNINNLMQISKRKAFEKINVVCPAEFILHSVIFIYIGFTKWL 305
           E+ W +L +     +   K    +  +C ++   HS+ F YI  +K L
Sbjct: 73  ELAWCFLTLATWSFMKLLKTLRIVIYICTSDHWTHSLRFYYIELSKIL 120


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 147 ESCFSSILNSSENVTSITNLNI 82
           ES FSS+++    + S+ NLNI
Sbjct: 207 ESSFSSLIDEESKLASLRNLNI 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,871
Number of Sequences: 5004
Number of extensions: 48723
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)