Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30218
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical pr...    31   0.56 
U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical p...    28   6.9  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical
           protein F55C5.2 protein.
          Length = 296

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 162 NNRISESCFSSILNSSENVTSITNLNIPYCCDLKTQVDESMYKK 31
           +N    S  S  +N  + +  +T LN+P+  D+ ++VD  M+ K
Sbjct: 252 SNEKGFSVISWTVNDEDYMRILTKLNVPFLTDIGSEVDRKMFMK 295


>U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical
           protein F43H9.3 protein.
          Length = 413

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 177 CNVLVNNRISESCFSSILNSSENVTSITNLNIPYCCDLKTQVDESMYK 34
           C VL  +  S  C S   +S+ENV  I+NL  PY   +K +  E + K
Sbjct: 10  CRVLQQSFASSECISHPSSSNENVKPISNL--PYVDYIKKKYPEKLEK 55


>Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical
           protein F35E2.6 protein.
          Length = 698

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 126 LNSSENVTSITNLNIPYC 73
           LN+  N+  I NLN+PYC
Sbjct: 430 LNNDWNIHDIQNLNVPYC 447


>Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical
           protein T05E12.1 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 8   DITRVY-YYFLYILSSTCVFKSQQ*GMLRFVMDVTFSELFRMDEKQLSLILLFTRTLQSC 184
           +I +V+ + F  ++  +CVF     G+  F     FS       K+L   L FT TLQ+ 
Sbjct: 195 NIQQVFGFLFCVVIMQSCVFAILFCGLRTFFYMKKFSFTMSQKTKELHRQLFFTLTLQTL 254

Query: 185 ELDFLLFL 208
                +F+
Sbjct: 255 LPGITMFI 262


>Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical
           protein F36G9.16 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  YFLYILSSTCVFKSQQ*GMLRFVMDVTFSELFRMDEKQL 145
           +FLYI+   C F S   G L FV+    S L++   K++
Sbjct: 304 FFLYIIGIFCEFVSIINGTLHFVLCACVSSLYQNTVKEM 342


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -1

Query: 162 NNRIS--ESCFSSILNSSENVTSITNLNIPYCCDLKT 58
           +NR++  + C S+  +SSE +   +NL+ P+ C LKT
Sbjct: 656 SNRVACYQFCQSASCSSSEVIYQPSNLDEPFDCSLKT 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,802,742
Number of Sequences: 27780
Number of extensions: 266762
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)