Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30218
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative              29   3.7  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    29   3.7  

>At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative
          Length = 268

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 26/95 (27%), Positives = 44/95 (46%)
 Frame = +2

Query: 92  FVMDVTFSELFRMDEKQLSLILLFTRTLQSCELDFLLFLMTNLFYFMFKQL*NPLFI*LP 271
           F+++   S+L     K L +  L     Q+ +L FL FL    +Y+   +L   LF+  P
Sbjct: 164 FLLEKALSKLPAGQHKILGIFDLRGFGSQNADLKFLTFLFDVFYYYYPSRLDEVLFVDAP 223

Query: 272 TLRMSR*PV*TKPFSKTYVYEYHRVKNKFCRADYI 376
            +     P+    F+K  V +Y  +  KFC A+ +
Sbjct: 224 FIFQ---PI--WQFTKPLVKQYASLV-KFCSAETV 252


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
           nearly identical to retinoblastoma-related protein
           [Arabidopsis thaliana] GI:8777927; contains Pfam
           profiles: PF01858 retinoblastoma-associated protein A
           domain, PF01857 retinoblastoma-associated protein B
           domain
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 478 LFTRITTCLCEIIWTYLNINNLMQISKRKAFEKINVVCPAEFIL 347
           L+ R+   +C+     L+ NNL  +   + F +  + C AE +L
Sbjct: 495 LYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSAELVL 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,352,997
Number of Sequences: 28952
Number of extensions: 223756
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)