Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30217
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 30 0.35
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 28 1.8
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 2.4
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 27 3.2
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 4.3
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 26 5.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 7.4
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 7.4
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 26 7.4
SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1 |Schizosac... 25 9.8
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 25 9.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.8
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 9.8
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 30.3 bits (65), Expect = 0.35
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 171 PSRQRDWSTSSDRRPRHKNGQSKLHQSQSENEQENYNCVLNC*RCFREVLS 323
PS ++ WST++ R + +H++ + + E Y+ +N CF ++L+
Sbjct: 343 PSSEKSWSTATSILKRESHSFIHVHENVKDEDIETYSSEVN--SCFSKMLA 391
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 120 RSSAERCGTTTGSPCWSPSRQRDWSTSSDRRPRHKNGQSKLHQSQS 257
+ + E G + WSP D S+ RRP+ KN S + + S
Sbjct: 376 KGAGEPLGIEGPTNMWSPFHDGDDDESTSRRPKPKNKPSNVTSTTS 421
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 65 DEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLVY 196
D+V K+W + K N + EKF + ++Q L SV R VY
Sbjct: 115 DQVLKVWLESKTNPCLDMEKFFQLCE-KFKQLGLSSVLKERFVY 157
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 282 SYSFLVHFLIDFDEVWIVRFYVGAFGPNW*TSLAVGTETSTD 157
S S+ V +D W+ + V AF P + + GT+ STD
Sbjct: 77 SISYTVAIDLDMPYTWLTYYNVMAFNPAYLGIVNSGTQWSTD 118
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 114 PSRSSAERCGTTTGSPCWSPSRQRDW 191
P S A G G P W SRQR W
Sbjct: 464 PPNSRARLLGFLNGRPEWCISRQRAW 489
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 223 KTDNPNFIKVNQKMNKKT 276
K D+PN IKVN + N +T
Sbjct: 212 KLDHPNIIKVNMEYNSET 229
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 565 YAALYRVPLFEYSGT---SSDNSRNLNWRVTVFEDSNRNWCINKREYQ 431
YA+L P F ++ NS +L W + +DSN+N +R+ Q
Sbjct: 125 YASLNTTPHFPQVSNHAPNNSNSPSLTWHTSSGDDSNQNPFFVRRQSQ 172
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 46 VQIRETGRSRKTMGQDEAK*QHDLREVQPSDAVPLPAVRAGLRPDSETGLPVRT 207
V + +T + E++ + RE++ + P VRA + P + LPV T
Sbjct: 100 VHVSAVQLDNETDSEVESEVEELERELEAIEDSVYPEVRAAVNPTDDVNLPVNT 153
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 339 KQHRCCSTPP*NIFNNSKRSY 277
K R C TPP N+ NN K +
Sbjct: 20 KASRLCFTPPTNLHNNKKNIF 40
>SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 120
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 513 SEDVPLYSNSGTRYNAAYVNGDTN 584
+ED+PL SG+ +N +N + N
Sbjct: 72 NEDIPLIQQSGSHWNQRLLNENAN 95
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 136 DAVPLPAVRAGLRPDSETGLPVRTEGPDIKTDN 234
+A+PL + G+ PD + L V G ++ +N
Sbjct: 243 EAIPLSRDQTGMNPDEASRLEVEHPGEEVLRNN 275
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 144 TTTGSPCWSPSRQRDWSTSSDRRPRHKNGQSKLHQSQSENEQENYN 281
+ + SP S S ++S R H N K H + N +YN
Sbjct: 270 SASNSPALSGSSTPSNTSSRSNRQNHGNFSEKRHYDRYGNSHPSYN 315
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = -1
Query: 667 LTINDKHQASPHEAWIKRTRTSDIESLTLVSPFTYAALYRVP-LFEYSGTSSDNSRNLNW 491
L +N S + R I L + TY L + + + ++N+ NL W
Sbjct: 215 LILNKTDLISSEALSVVRQTILKINCLAKIIETTYGRLDDISEILDLDAYGNENTSNLEW 274
Query: 490 RVTVFEDSNRN 458
+ DSN N
Sbjct: 275 SIQRSNDSNIN 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,470
Number of Sequences: 5004
Number of extensions: 70214
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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