Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30217
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    28   7.8  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           28   7.8  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    28   7.8  

>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +3

Query: 117 SRS-SAERCGTTTGSPCWSPS--RQRDWSTSSDRRPRHK---NGQSKLHQSQSENEQENY 278
           SRS S E  G      C SP+  RQ + STS  RR +H+   +GQ+K H  +  +    Y
Sbjct: 667 SRSRSPELRGHARSRSC-SPATGRQDNQSTSPQRREKHQTKSSGQAKEHDEKRRSYTPEY 725

Query: 279 N 281
           N
Sbjct: 726 N 726


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 141 GTTTGSPCWS-PSRQRDWSTSSDRRPRHKNG 230
           G   GSP WS PS +R  S SS +   HK+G
Sbjct: 748 GVAEGSPPWSSPSTRRRLSGSSAKPDGHKDG 778


>02_01_0598 +
           4440018-4440070,4440627-4440693,4440794-4440926,
           4441075-4441120,4442470-4442521,4442601-4442753,
           4443338-4443457,4443549-4443714,4443822-4443934,
           4444049-4444120,4444992-4445213,4445270-4445317,
           4445639-4445697,4445809-4445887,4445982-4446119,
           4446327-4446551,4446643-4447430,4447548-4447723,
           4447911-4448169,4448646-4448707,4451055-4451212,
           4451618-4451743,4452197-4452260,4452386-4452494,
           4452607-4452760,4453055-4453178,4453257-4453333,
           4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 174 SRQRDWSTSSDRRPRHKNGQSKLHQSQSEN 263
           SR+    TSS+RR RH +   K H+S S +
Sbjct: 899 SRRSSERTSSERRDRHDDSSRKRHRSLSRS 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,366,343
Number of Sequences: 37544
Number of extensions: 404433
Number of successful extensions: 1078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)