Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30217
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 84 1e-16
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical ... 66 2e-11
AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical ... 66 2e-11
U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical pr... 65 5e-11
U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class trans... 64 9e-11
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 58 1e-08
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 58 1e-08
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 58 1e-08
U97005-6|AAB52279.1| 242|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AF036689-2|AAB88319.1| 180|Caenorhabditis elegans Hypothetical ... 52 7e-07
U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical pr... 48 8e-06
U41547-4|AAA83194.3| 376|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 35 0.061
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 35 0.061
U64598-8|AAQ82848.1| 396|Caenorhabditis elegans Hypothetical pr... 35 0.061
U64598-9|AAK39212.2| 174|Caenorhabditis elegans Hypothetical pr... 34 0.11
U55364-5|AAQ23124.1| 368|Caenorhabditis elegans Prion-like-(q/n... 31 0.75
U55364-4|AAA97972.1| 382|Caenorhabditis elegans Prion-like-(q/n... 31 0.75
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 30 2.3
AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical... 30 2.3
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 4.0
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 4.0
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 4.0
Z81509-1|CAB04154.1| 332|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 29 5.3
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 29 5.3
Z72512-8|CAH04717.1| 583|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical pr... 28 9.3
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Frame = +2
Query: 5 CPSIIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTA 184
CPS+++WED G FR V+ +++A+LWG K N+ MT+EK SRAMR +Y + +LV VP
Sbjct: 410 CPSVVRWEDPIEGVFRIVESEKLARLWGARKNNEKMTYEKLSRAMRTYYEKQILVPVPKT 469
Query: 185 -----RLVYQFGPKA 214
+LVY+FGP A
Sbjct: 470 GLYPKKLVYKFGPGA 484
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Frame = +2
Query: 5 CPSIIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTA 184
CPS+++WED G FR V+ +++A+LWG K N+ MT+EK SRAMR +Y + +LV VP
Sbjct: 410 CPSVVRWEDPIEGVFRIVESEKLARLWGARKNNEKMTYEKLSRAMRTYYEKQILVPVPKT 469
Query: 185 -----RLVYQFGPKA 214
+LVY+FGP A
Sbjct: 470 GLYPKKLVYKFGPGA 484
>AF024491-4|AAZ82855.1| 365|Caenorhabditis elegans Hypothetical
protein C24A1.2b protein.
Length = 365
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +2
Query: 2 YCPSIIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPT 181
Y P IKW D A G F+ V V++LWG K M +E RA+RY+Y++ +L V
Sbjct: 254 YSPKFIKWIDQAKGIFKLVDSKAVSRLWGMHKNKPGMNYETMGRALRYYYQRGILQKVDG 313
Query: 182 ARLVYQF 202
RLVY+F
Sbjct: 314 QRLVYRF 320
>AF024491-3|AAB70311.2| 420|Caenorhabditis elegans Hypothetical
protein C24A1.2a protein.
Length = 420
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +2
Query: 2 YCPSIIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPT 181
Y P IKW D A G F+ V V++LWG K M +E RA+RY+Y++ +L V
Sbjct: 309 YSPKFIKWIDQAKGIFKLVDSKAVSRLWGMHKNKPGMNYETMGRALRYYYQRGILQKVDG 368
Query: 182 ARLVYQF 202
RLVY+F
Sbjct: 369 QRLVYRF 375
>U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical
protein T08H4.3 protein.
Length = 377
Score = 65.3 bits (152), Expect = 5e-11
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +2
Query: 14 IIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLV 193
+I WE G+F+ V PDEVA+ WG+ K NM ++K SRA+RY+Y ++++ V R
Sbjct: 232 VITWEG-TQGEFKLVDPDEVARKWGERKSKPNMNYDKMSRALRYYYDKNIMAKVHGKRYA 290
Query: 194 YQF 202
Y+F
Sbjct: 291 YKF 293
>U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class
transcription factorprotein 5 protein.
Length = 208
Score = 64.5 bits (150), Expect = 9e-11
Identities = 27/62 (43%), Positives = 41/62 (66%)
Frame = +2
Query: 17 IKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLVY 196
I WE + G+F+ V PDEVA+ WG+ K NM ++K SRA+RY+Y ++++ V R Y
Sbjct: 54 IAWEG-SNGEFKLVDPDEVARKWGERKSKPNMNYDKLSRALRYYYDKNIMTKVQGKRYAY 112
Query: 197 QF 202
+F
Sbjct: 113 KF 114
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/63 (36%), Positives = 40/63 (63%)
Frame = +2
Query: 14 IIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLV 193
II+W G+FR + + VA+ WG+ K +M ++K SRA+RY+Y ++++ V + V
Sbjct: 82 IIEWTRGTDGEFRLIDAEAVARKWGQRKAKPHMNYDKLSRALRYYYEKNIIKKVIGKKFV 141
Query: 194 YQF 202
Y+F
Sbjct: 142 YRF 144
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/63 (36%), Positives = 40/63 (63%)
Frame = +2
Query: 14 IIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLV 193
II+W G+FR + + VA+ WG+ K +M ++K SRA+RY+Y ++++ V + V
Sbjct: 82 IIEWTRGTDGEFRLIDAEAVARKWGQRKAKPHMNYDKLSRALRYYYEKNIIKKVIGKKFV 141
Query: 194 YQF 202
Y+F
Sbjct: 142 YRF 144
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/63 (36%), Positives = 40/63 (63%)
Frame = +2
Query: 14 IIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLV 193
II+W G+FR + + VA+ WG+ K +M ++K SRA+RY+Y ++++ V + V
Sbjct: 82 IIEWTRGTDGEFRLIDAEAVARKWGQRKAKPHMNYDKLSRALRYYYEKNIIKKVIGKKFV 141
Query: 194 YQF 202
Y+F
Sbjct: 142 YRF 144
>U97005-6|AAB52279.1| 242|Caenorhabditis elegans Hypothetical
protein F19F10.1 protein.
Length = 242
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +2
Query: 14 IIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLV 193
II W D + F+ KP +VA+LWG N M ++K SR +RY Y + L VP
Sbjct: 62 IIYWFDKSESVFKMSKPHKVAELWGAATGNPGMNYDKMSRGLRYFYTNNTLEKVPGKDAR 121
Query: 194 YQF 202
Y+F
Sbjct: 122 YRF 124
>AF036689-2|AAB88319.1| 180|Caenorhabditis elegans Hypothetical
protein C50A2.4 protein.
Length = 180
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +2
Query: 14 IIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSVPTARLV 193
IIKW + +F+ V EVA+LWG K N M +E SR++R +Y+ ++ +P
Sbjct: 87 IIKWTKKSSLEFQMVDRQEVARLWGAEKGNLKMDYEFLSRSIRSYYKSGIMRKIPGKDFR 146
Query: 194 YQF 202
YQF
Sbjct: 147 YQF 149
>U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical
protein F19F10.5 protein.
Length = 314
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +2
Query: 14 IIKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVSV 175
+I W + +F+ +KP +VA+LWG N M ++K SR +RY Y + L V
Sbjct: 87 LITWSNKDTLEFQMLKPHKVAELWGAATGNPGMNYDKMSRGLRYFYTNNTLKKV 140
>U41547-4|AAA83194.3| 376|Caenorhabditis elegans Hypothetical
protein F22A3.1 protein.
Length = 376
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 17 IKWEDYALGKFRFVKPDEVAKLWGKMKQNDNMTFEKFSRAMRYHYRQSVLVS-VPTARLV 193
++W D G F+ +A+ WG+ K M ++K SR++R +Y++ ++ RLV
Sbjct: 308 VRWVDRDEGTFKIESSLLLARYWGQRKNRSQMNYDKLSRSLRQYYKKGIIQKPEKKQRLV 367
Query: 194 YQFGP 208
Y+F P
Sbjct: 368 YKFLP 372
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 114 PSRSSAERCGTTTGSPCWSPSRQRDWSTSSDRRPRHKNGQSKLHQSQSENEQEN 275
P R + + + SP S SR R S S + P +NG+ H+S+S+N +
Sbjct: 164 PVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRS 217
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 114 PSRSSAERCGTTTGSPCWSPSRQRDWSTSSDRRPRHKNGQSKLHQSQSENEQEN 275
P R + + + SP S SR R S S + P +NG+ H+S+S+N +
Sbjct: 164 PVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRS 217
>U64598-8|AAQ82848.1| 396|Caenorhabditis elegans Hypothetical
protein C52B9.2b protein.
Length = 396
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 17 IKWEDYALGKFRFVKPDEVAKLWGKMKQN-DNMTFEKFSRAMRYHYRQS 160
+ W L +F V V+KLWG K+N +M + K SRAMR Y+ +
Sbjct: 296 LHWTGNGL-EFVIVNTKLVSKLWGNRKRNTKDMNYSKLSRAMRDKYKSA 343
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 17 IKWEDYALGKFRFVKPDEVAKLWGKMKQN-DNMTFEKFSRAMRYHYRQ 157
++W L +F V + VAK+WG K N +M + K SRA+R Y +
Sbjct: 104 LRWTGNGL-EFVLVNKELVAKMWGNRKHNTKDMDYYKLSRAIREKYEK 150
>U64598-9|AAK39212.2| 174|Caenorhabditis elegans Hypothetical
protein C52B9.2a protein.
Length = 174
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 17 IKWEDYALGKFRFVKPDEVAKLWGKMKQN-DNMTFEKFSRAMRYHYRQ 157
++W L +F V + VAK+WG K N +M + K SRA+R Y +
Sbjct: 37 LRWTGNGL-EFVLVNKELVAKMWGNRKHNTKDMDYYKLSRAIREKYEK 83
>U55364-5|AAQ23124.1| 368|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform b protein.
Length = 368
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 102 MTT*PSRSSAERCGTTTGSPCWSPSRQRD-----WSTSSDRRPRHKNGQSKLHQSQSENE 266
M T P +A+ CG TT + + QRD ++S + ++NGQ + Q Q +N
Sbjct: 233 MPTAPCLCNAQNCGNTTNTNAIGNTPQRDAYGNQMGSNSQFQQANQNGQYQNTQYQQQNG 292
Query: 267 QENYN 281
Q N
Sbjct: 293 QNGQN 297
>U55364-4|AAA97972.1| 382|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform a protein.
Length = 382
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 102 MTT*PSRSSAERCGTTTGSPCWSPSRQRD-----WSTSSDRRPRHKNGQSKLHQSQSENE 266
M T P +A+ CG TT + + QRD ++S + ++NGQ + Q Q +N
Sbjct: 247 MPTAPCLCNAQNCGNTTNTNAIGNTPQRDAYGNQMGSNSQFQQANQNGQYQNTQYQQQNG 306
Query: 267 QENYN 281
Q N
Sbjct: 307 QNGQN 311
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = -1
Query: 655 DKHQASPHEAWIKRTRTSDIESLTLVSPFTYAALYRVPLFEYSGTSSDNSRNLNWRVTVF 476
D+ Q+SP + + ++S + S S Y+ V +Y G ++N+ N N + F
Sbjct: 76 DRIQSSPATSRFIQNKSSTLPSSYSDSTQQYSFENTVATSQYGGLQTNNNNN-NINMNSF 134
Query: 475 EDSNRNWCINKREYQ 431
E RN I +R+++
Sbjct: 135 EPYWRNGSIYRRQFE 149
>AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical
protein Y39B6A.39 protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 133 SDAVPLPAVRAGLRPDSETGLPVRTEGPDIKTDNPNFI 246
S VPLP VR G RP+ E P + EG PNF+
Sbjct: 117 SSVVPLP-VRMGTRPNVEKRAPFKKEGNLELVKIPNFL 153
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Frame = +1
Query: 124 VQPSDAVPLP--AVRAGLRPDSET------GLPVRTEGPDIKTDNP-NFIKV 252
V+ D +PLP A A + PD ET G+P+ +G + TDN N++ V
Sbjct: 5118 VRGPDGIPLPTDASGAAIGPDGETIATDENGIPLSKDGSPLPTDNTGNYVLV 5169
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 175 PDSETGLPVRTEGPDIKTDNP-NFIKV 252
P ETGLP+ +G + TDN N+I +
Sbjct: 5288 PTDETGLPLNKDGSPLPTDNDGNYILI 5314
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Frame = +1
Query: 124 VQPSDAVPLP--AVRAGLRPDSET------GLPVRTEGPDIKTDNP-NFIKV 252
V+ D +PLP A A + PD ET G+P+ +G + TDN N++ V
Sbjct: 5163 VRGPDGIPLPTDASGAAIGPDGETIATDENGIPLSKDGSPLPTDNTGNYVLV 5214
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 175 PDSETGLPVRTEGPDIKTDNP-NFIKV 252
P ETGLP+ +G + TDN N+I +
Sbjct: 5333 PTDETGLPLNKDGSPLPTDNDGNYILI 5359
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Frame = +1
Query: 124 VQPSDAVPLP--AVRAGLRPDSET------GLPVRTEGPDIKTDNP-NFIKV 252
V+ D +PLP A A + PD ET G+P+ +G + TDN N++ V
Sbjct: 5163 VRGPDGIPLPTDASGAAIGPDGETIATDENGIPLSKDGSPLPTDNTGNYVLV 5214
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 175 PDSETGLPVRTEGPDIKTDNP-NFIKV 252
P ETGLP+ +G + TDN N+I +
Sbjct: 5333 PTDETGLPLNKDGSPLPTDNDGNYILI 5359
>Z81509-1|CAB04154.1| 332|Caenorhabditis elegans Hypothetical
protein F21A3.1 protein.
Length = 332
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +3
Query: 417 LILIYWYSRLLMHQFRFESS---------KTVTLQLRFRLLSEDVPLYSNSGTRYNAAYV 569
+ LIYW R M + + KT+ LQ+ L++ PL N T YN+ Y
Sbjct: 211 VFLIYWNMRKSMVEVKMSKRTLDMHRTFLKTIILQVTIPLITVMGPLMLNFFTIYNSYYN 270
Query: 570 NGDTNVKDSISLVRVRFIQAS 632
G N+ SIS++ + +S
Sbjct: 271 QGANNL--SISMMATHGLVSS 289
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 6 ARPSSNGKTTH*ESSDS*NRTKSQ-NYGAR*S-KMTT*PSRSSAERCGTTTGSPCWSPSR 179
A+ N H + R KS +G + S M+T S++ CGTTT +P +P
Sbjct: 305 AKSDDNENIAHLACKIARTRAKSMVGHGRKSSGTMSTGTMESNSSSCGTTTITPGGTPRT 364
Query: 180 QRDWSTSS 203
QR + S
Sbjct: 365 QRRFELES 372
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 6 ARPSSNGKTTH*ESSDS*NRTKSQ-NYGAR*S-KMTT*PSRSSAERCGTTTGSPCWSPSR 179
A+ N H + R KS +G + S M+T S++ CGTTT +P +P
Sbjct: 305 AKSDDNENIAHLACKIARTRAKSMVGHGRKSSGTMSTGTMESNSSSCGTTTITPGGTPRT 364
Query: 180 QRDWSTSS 203
QR + S
Sbjct: 365 QRRFELES 372
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +3
Query: 177 RQRDWSTSSDRR--PRHKNGQSKL--HQSQSENEQENYN 281
RQRDW TS +RR P + QS+ H S N + N
Sbjct: 177 RQRDWRTSDERRGLPTRRETQSQYVKHNYSSTNRRAELN 215
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 6 ARPSSNGKTTH*ESSDS*NRTKSQ-NYGAR*S-KMTT*PSRSSAERCGTTTGSPCWSPSR 179
A+ N H + R KS +G + S M+T S++ CGTTT +P +P
Sbjct: 305 AKSDDNENIAHLACKIARTRAKSMVGHGRKSSGTMSTGTMESNSSSCGTTTITPGGTPRT 364
Query: 180 QRDWSTSS 203
QR + S
Sbjct: 365 QRRFELES 372
>Z72512-8|CAH04717.1| 583|Caenorhabditis elegans Hypothetical
protein R07B5.8b protein.
Length = 583
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 114 PSRSSAERCGTTTGSPCWSPSRQRDWSTSSDRRPRHKNGQSKLHQSQSENEQEN 275
PS SSA CG +T P + ++R + S+ R + K L Q E ++
Sbjct: 52 PSSSSAASCGLSTPDPDRTSQQRRKGNQSAARSRKIKTPSPPLSQEDEPMELDS 105
>Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical
protein R07B5.8a protein.
Length = 568
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 114 PSRSSAERCGTTTGSPCWSPSRQRDWSTSSDRRPRHKNGQSKLHQSQSENEQEN 275
PS SSA CG +T P + ++R + S+ R + K L Q E ++
Sbjct: 97 PSSSSAASCGLSTPDPDRTSQQRRKGNQSAARSRKIKTPSPPLSQEDEPMELDS 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,994
Number of Sequences: 27780
Number of extensions: 386444
Number of successful extensions: 1115
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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