Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30217
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    34   0.099
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr...    29   2.8  
At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive eff...    29   4.9  
At1g78110.1 68414.m09103 expressed protein                             29   4.9  
At1g12330.1 68414.m01425 expressed protein                             29   4.9  
At1g32950.1 68414.m04058 subtilase family protein contains simil...    28   6.5  
At1g76850.1 68414.m08943 expressed protein                             28   8.6  

>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 123  SSAERCGTTTGSPCWSPSRQRDWSTSSDRRPRHKNGQSKLHQSQS 257
            SS  R  + +GS   S SR R WS S  R PRH   +   ++S+S
Sbjct: 969  SSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRSRS 1013


>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 988

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 486 TLQLRF-RLLSEDVPLYSNSGTRYNAAYVNGDTNVKD 593
           T+ L F  ++  +  +YSN G RY   YV G   VKD
Sbjct: 468 TVNLHFAEIMFNEKNMYSNLGRRYFDIYVQGKREVKD 504


>At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 689

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 396 NMVSAHSLILIYWYSRLLMHQFRFESSKTVTLQLRFRLLSEDVPLYSNSGTRYNAAYVNG 575
           N+   + LIL Y +S      F   SSK++++  ++   S    +Y  + TR   A  NG
Sbjct: 10  NVDDLNPLILAYVFSVGDELHFSVHSSKSISIDEQYSFRSGFFLIYLTTNTRIWKALHNG 69

Query: 576 DTNV 587
           D N+
Sbjct: 70  DGNL 73


>At1g78110.1 68414.m09103 expressed protein 
          Length = 342

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 150 TGSPCWSPSRQRDWSTSSDRRPRHKNGQSKL 242
           T  P  SPSR  D ST+  RRP H+   SKL
Sbjct: 33  TPKPICSPSRPSDSSTN--RRPHHRRQLSKL 61


>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 604 SDIESLTLVSPFTYAALYRVPLFEYSGTSSDNSRNLNWRVTVFEDSNR 461
           S  +SLT  SP   +A   +P    S +++D SR   WR+ V E S++
Sbjct: 137 SIFQSLTRRSPKPSSATAALPPRSSSSSAADASREEQWRLAVAELSHK 184


>At1g32950.1 68414.m04058 subtilase family protein contains
           similarity to SBT1 GI:1771160 from [Lycopersicon
           esculentum]
          Length = 773

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 610 RTSDIESLTLVSPFTYAALYRVPLFEYSGTSSDNSRNL 497
           + +D   +  V P +Y  L    +++Y G S+DNS+NL
Sbjct: 89  KIADSPEVIHVIPDSYYELATTRIWDYLGPSADNSKNL 126


>At1g76850.1 68414.m08943 expressed protein
          Length = 1090

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +3

Query: 186 DWSTSSDRRPRHKNGQSKLHQSQSENEQENYNCVLNC*RCFREVLSNI 329
           D S S+ R+   KNG S  H  Q E     Y  V++  R    VLSNI
Sbjct: 754 DLSQSTSRQDNWKNGYSDEH--QEEPSANTYGSVIDPHRRLLMVLSNI 799


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,751
Number of Sequences: 28952
Number of extensions: 344233
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)