Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30215
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 82 6e-17
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 77 3e-15
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 31 0.20
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 2.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.3
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 26 4.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.8
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 25 7.6
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 82.2 bits (194), Expect = 6e-17
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +3
Query: 54 ALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDIGAL 233
A+ I+RGY + +GGTD HL LVDL G+ GA ER+LEL +++ NKNTVPGD AL
Sbjct: 328 AMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSAL 387
Query: 234 NPSGIRL 254
P G+RL
Sbjct: 388 IPRGLRL 394
Score = 41.9 bits (94), Expect = 8e-05
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +2
Query: 236 PQRHQTRTPALTTRGLKEADIDIVVDFIDRALKXGLEI----IKVSGLKLVDFNKAIEEN 403
P+ + TPA TTRG E D + VV+ ID + +I +K K DF + +
Sbjct: 389 PRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDFKAYVGDG 448
Query: 404 AEFKKKIENLKEEVENYSKSFPLP 475
++F +I LK+EV ++ F P
Sbjct: 449 SKF-SEIAKLKKEVITWAGKFDFP 471
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 76.6 bits (180), Expect = 3e-15
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Frame = +3
Query: 45 ERAALCEGLIS-RGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGD 221
+ A +CE RGY +A GTD H+ LVD++ G+ GA AERVLEL ++ NKNTVP D
Sbjct: 318 KNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSD 377
Query: 222 IGALNPSGIRL 254
A +PSGIR+
Sbjct: 378 KSAFSPSGIRV 388
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Frame = +2
Query: 236 PQRHQTRTPALTTRGLKEADIDIVVDFIDRALKXGLEIIK---VSGLKLVDFNKAIEENA 406
P + TPA+TTRG KE D VVD+IDRAL + K KL DF + E
Sbjct: 383 PSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGE 442
Query: 407 EFKKKIENLKEEVENYSKSFPL 472
++ + ++ L++EV ++ SFPL
Sbjct: 443 QYPELVQ-LQKEVAEWASSFPL 463
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 30.7 bits (66), Expect = 0.20
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 299 DIVVDFIDRALKXG-LEIIKVSGLKLV---DFNKAIEENAEFKKKIENLKEEVENYSKSF 466
DI+ DF D K G E S L+ +F+K +++ E K ++LKEE+ NY S
Sbjct: 228 DIIKDFTDSPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLK--QSLKEEMSNYKSSV 285
Query: 467 P 469
P
Sbjct: 286 P 286
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 117 LALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDIGAL 233
LA++ LR G P +R++ L + T GDIG L
Sbjct: 532 LAIIRLRTKQRNGKPQDRIISLLVPEMDVITAVGDIGTL 570
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +3
Query: 30 ETGDKERAALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNT 209
E D ER EG++ R D+HL L+D + + A ++ +K
Sbjct: 685 ELRDPEREFFFEGIVQRRSDSRLDWLDIHLFLLD-NYLIMAKARKDKRTNASRYVVSKRP 743
Query: 210 VPGDIGALNP 239
+P D+ L+P
Sbjct: 744 IPLDLLVLSP 753
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 242 RHQTRTPALTTRGLKEADIDIV---VDFIDRALKXGLEIIKVSGLKLVDFNKAIEEN 403
RHQ R + RG+K AD ++ +DF D + + + S L ++D + + +N
Sbjct: 80 RHQFRAELMFLRGIKVADSSVLMLSLDFSDSGKELAVSMSNGSVL-IIDIDSGVIKN 135
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 329 LKXGLEIIKVSGLKL-VDFNKAIEENAEFKKKIENLKEEVENYSK 460
LK E ++ +L + +E FK+++ +L EEVEN K
Sbjct: 1357 LKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKK 1401
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 385 IEVNKFQPGNLNDF*TXFQCSINKIDNYINISFLETSCGQRWCTSLMPL 239
++ N +P + F + +IN+ SF+ CG +W + PL
Sbjct: 20 VQPNALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEPL 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 371 LVDFNKAIEENA-EFKKKIENLKEEVENYSKS 463
L N +I++ E+++K+E LK+E+E Y+K+
Sbjct: 110 LESLNNSIKQKQDEYQRKLEELKKEIE-YAKT 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,445
Number of Sequences: 5004
Number of extensions: 34625
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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