BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30215 (677 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 82 6e-17 SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 77 3e-15 SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 31 0.20 SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 2.5 SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.3 SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 26 4.4 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.8 SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 25 7.6 SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6 >SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 472 Score = 82.2 bits (194), Expect = 6e-17 Identities = 37/67 (55%), Positives = 47/67 (70%) Frame = +3 Query: 54 ALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDIGAL 233 A+ I+RGY + +GGTD HL LVDL G+ GA ER+LEL +++ NKNTVPGD AL Sbjct: 328 AMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSAL 387 Query: 234 NPSGIRL 254 P G+RL Sbjct: 388 IPRGLRL 394 Score = 41.9 bits (94), Expect = 8e-05 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Frame = +2 Query: 236 PQRHQTRTPALTTRGLKEADIDIVVDFIDRALKXGLEI----IKVSGLKLVDFNKAIEEN 403 P+ + TPA TTRG E D + VV+ ID + +I +K K DF + + Sbjct: 389 PRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDFKAYVGDG 448 Query: 404 AEFKKKIENLKEEVENYSKSFPLP 475 ++F +I LK+EV ++ F P Sbjct: 449 SKF-SEIAKLKKEVITWAGKFDFP 471 >SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 467 Score = 76.6 bits (180), Expect = 3e-15 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 1/71 (1%) Frame = +3 Query: 45 ERAALCEGLIS-RGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGD 221 + A +CE RGY +A GTD H+ LVD++ G+ GA AERVLEL ++ NKNTVP D Sbjct: 318 KNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSD 377 Query: 222 IGALNPSGIRL 254 A +PSGIR+ Sbjct: 378 KSAFSPSGIRV 388 Score = 54.8 bits (126), Expect = 1e-08 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Frame = +2 Query: 236 PQRHQTRTPALTTRGLKEADIDIVVDFIDRALKXGLEIIK---VSGLKLVDFNKAIEENA 406 P + TPA+TTRG KE D VVD+IDRAL + K KL DF + E Sbjct: 383 PSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGE 442 Query: 407 EFKKKIENLKEEVENYSKSFPL 472 ++ + ++ L++EV ++ SFPL Sbjct: 443 QYPELVQ-LQKEVAEWASSFPL 463 >SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|Schizosaccharomyces pombe|chr 2|||Manual Length = 514 Score = 30.7 bits (66), Expect = 0.20 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +2 Query: 299 DIVVDFIDRALKXG-LEIIKVSGLKLV---DFNKAIEENAEFKKKIENLKEEVENYSKSF 466 DI+ DF D K G E S L+ +F+K +++ E K ++LKEE+ NY S Sbjct: 228 DIIKDFTDSPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLK--QSLKEEMSNYKSSV 285 Query: 467 P 469 P Sbjct: 286 P 286 >SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 27.1 bits (57), Expect = 2.5 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 117 LALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDIGAL 233 LA++ LR G P +R++ L + T GDIG L Sbjct: 532 LAIIRLRTKQRNGKPQDRIISLLVPEMDVITAVGDIGTL 570 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 26.6 bits (56), Expect = 3.3 Identities = 18/70 (25%), Positives = 30/70 (42%) Frame = +3 Query: 30 ETGDKERAALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNT 209 E D ER EG++ R D+HL L+D + + A ++ +K Sbjct: 685 ELRDPEREFFFEGIVQRRSDSRLDWLDIHLFLLD-NYLIMAKARKDKRTNASRYVVSKRP 743 Query: 210 VPGDIGALNP 239 +P D+ L+P Sbjct: 744 IPLDLLVLSP 753 >SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccharomyces pombe|chr 3|||Manual Length = 310 Score = 26.2 bits (55), Expect = 4.4 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +2 Query: 242 RHQTRTPALTTRGLKEADIDIV---VDFIDRALKXGLEIIKVSGLKLVDFNKAIEEN 403 RHQ R + RG+K AD ++ +DF D + + + S L ++D + + +N Sbjct: 80 RHQFRAELMFLRGIKVADSSVLMLSLDFSDSGKELAVSMSNGSVL-IIDIDSGVIKN 135 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 25.8 bits (54), Expect = 5.8 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 329 LKXGLEIIKVSGLKL-VDFNKAIEENAEFKKKIENLKEEVENYSK 460 LK E ++ +L + +E FK+++ +L EEVEN K Sbjct: 1357 LKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKK 1401 >SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 594 Score = 25.4 bits (53), Expect = 7.6 Identities = 12/49 (24%), Positives = 22/49 (44%) Frame = -2 Query: 385 IEVNKFQPGNLNDF*TXFQCSINKIDNYINISFLETSCGQRWCTSLMPL 239 ++ N +P + F + +IN+ SF+ CG +W + PL Sbjct: 20 VQPNALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEPL 68 >SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual Length = 614 Score = 25.4 bits (53), Expect = 7.6 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = +2 Query: 371 LVDFNKAIEENA-EFKKKIENLKEEVENYSKS 463 L N +I++ E+++K+E LK+E+E Y+K+ Sbjct: 110 LESLNNSIKQKQDEYQRKLEELKKEIE-YAKT 140 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,079,445 Number of Sequences: 5004 Number of extensions: 34625 Number of successful extensions: 130 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 130 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 311890690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -