Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30215
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 73 3e-13
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 70 2e-12
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 68 6e-12
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 67 1e-11
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 61 7e-10
11_04_0410 - 17347853-17347978,17348289-17348399,17348481-173488... 35 0.052
10_02_0015 + 4243218-4243420,4243553-4243745,4243818-4243898,424... 35 0.052
08_02_1108 - 24360289-24360414,24360725-24360822,24361129-243612... 33 0.21
11_04_0336 - 16507661-16507753,16508061-16508158,16508311-165086... 33 0.28
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 30 2.0
03_02_0350 - 7734494-7734952,7735765-7736133 29 4.5
01_05_0098 - 18088331-18088376,18088703-18088935,18089078-180892... 28 6.0
10_08_0069 - 14627547-14627570,14628305-14628404,14628500-146286... 28 7.9
09_02_0237 + 6141048-6141962 28 7.9
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = +3
Query: 54 ALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDIGAL 233
AL L+S+GY + T GT+ HL L DLR +GL G E+V +LCS+ NKN V GD A+
Sbjct: 277 ALGNHLMSKGYKLVTDGTENHLVLWDLRPLGLTGNKVEKVCDLCSITLNKNAVFGDSSAM 336
Query: 234 NPSGIRL 254
+P G+R+
Sbjct: 337 SPGGVRI 343
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/75 (41%), Positives = 47/75 (62%)
Frame = +2
Query: 257 TPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKIENLK 436
TPA+T+RGL E D + +F+ +A+ L++ K G L FN+ +E N K IE+L+
Sbjct: 345 TPAMTSRGLVEEDFVQIAEFLHQAVTICLDVQKERGKLLKYFNEGLENN----KDIEDLR 400
Query: 437 EEVENYSKSFPLPGF 481
EVE ++ SF +PGF
Sbjct: 401 AEVEKFATSFEMPGF 415
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +3
Query: 54 ALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDIGAL 233
A+ + L+S+GY + T GT+ HL L DLR +GL G E++ +LCS+ NKN V GD AL
Sbjct: 324 AIGKYLMSKGYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSAL 383
Query: 234 NPSGIRL 254
P G+R+
Sbjct: 384 APGGVRI 390
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/75 (45%), Positives = 47/75 (62%)
Frame = +2
Query: 257 TPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKIENLK 436
TPA+T+RGL E D + + +F+ +A+ L I K G L DF+K + N K IENLK
Sbjct: 392 TPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKDFSKGLVNN----KDIENLK 447
Query: 437 EEVENYSKSFPLPGF 481
EVE ++ SF +PGF
Sbjct: 448 LEVEKFATSFDMPGF 462
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 68.1 bits (159), Expect = 6e-12
Identities = 29/61 (47%), Positives = 42/61 (68%)
Frame = +3
Query: 51 AALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDIGA 230
A + L ++GY + +GGTD HL LV+L+ G+ G+ E+VLE +A NKNTVPGD+ A
Sbjct: 347 AKFAQSLTAKGYELVSGGTDNHLVLVNLKSKGIDGSRVEKVLENVHIAANKNTVPGDVSA 406
Query: 231 L 233
+
Sbjct: 407 M 407
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 TPALTTRGLKEADIDIVVDFIDRALKXGLEI-IKVSGLKLVDFNKAIEENAEFKKKIENL 433
TPALT+RG E D V DF D A+ L++ G KL DF ++ ++ + +I L
Sbjct: 414 TPALTSRGFVEEDFAKVADFFDAAVNLALKVKAAAGGTKLKDFVATLQSDSNIQSEIAKL 473
Query: 434 KEEVENYSKSFPLPGFDK 487
+ +VE Y+K FP GF+K
Sbjct: 474 RHDVEEYAKQFPTIGFEK 491
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/71 (43%), Positives = 43/71 (60%)
Frame = +3
Query: 42 KERAALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGD 221
K AL L+ R + TGGTD HL L DLR +GL G E+V E C ++ NK + GD
Sbjct: 456 KNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGD 515
Query: 222 IGALNPSGIRL 254
G+++P G+R+
Sbjct: 516 NGSISPGGVRI 526
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/76 (36%), Positives = 45/76 (59%)
Frame = +2
Query: 257 TPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKIENLK 436
TPA+TTRG E D +++ DF+ RA + ++K G +F + ++ N K I L+
Sbjct: 528 TPAMTTRGCLEDDFEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNN----KDIIELR 583
Query: 437 EEVENYSKSFPLPGFD 484
+VEN++ F +PGFD
Sbjct: 584 NQVENFASQFAMPGFD 599
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/68 (44%), Positives = 39/68 (57%)
Frame = +3
Query: 42 KERAALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGD 221
K AL L+ R + TGGTD HL L DLR GL G E+V E C ++ NK + GD
Sbjct: 427 KNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVCEACHISLNKTPIYGD 486
Query: 222 IGALNPSG 245
G+++P G
Sbjct: 487 NGSISPGG 494
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/76 (38%), Positives = 44/76 (57%)
Frame = +2
Query: 257 TPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKIENLK 436
TPA+TTRG E+D +I+ +F+ RA ++K G DF K +E N + I L+
Sbjct: 495 TPAMTTRGCLESDFEIMAEFLLRAAHIASIVLKEHGRLQKDFLKGLENNND----IIELR 550
Query: 437 EEVENYSKSFPLPGFD 484
+VE ++ F +PGFD
Sbjct: 551 NQVETFALQFAMPGFD 566
>11_04_0410 -
17347853-17347978,17348289-17348399,17348481-17348840,
17348913-17349105,17349239-17349279
Length = 276
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +2
Query: 254 RTPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKIENL 433
RTPALT R K + + ++ DR LK K V+ +K +E+N FKKK+ +
Sbjct: 49 RTPALTWRDYKRSTNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQN--FKKKVPQM 106
>10_02_0015 +
4243218-4243420,4243553-4243745,4243818-4243898,
4244267-4244377,4244921-4245211,4245301-4245363,
4245571-4245636,4245761-4245979
Length = 408
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 248 QTRTPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKI 424
+ RTPALT R K + + ++ DR LK K V+ +K +E+N FKKK+
Sbjct: 101 ECRTPALTWRDYKRSTNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQN--FKKKV 157
>08_02_1108 -
24360289-24360414,24360725-24360822,24361129-24361291,
24361364-24361556,24361690-24361730
Length = 206
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 254 RTPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKIENL 433
RTPALT R K + + ++ +R LK K V+ +K +E+N FKKK+ +
Sbjct: 49 RTPALTWRDYKRSTNERIMSPANRVLKEFWYCFKCDPTDKVEADKVLEQN--FKKKVPQM 106
>11_04_0336 -
16507661-16507753,16508061-16508158,16508311-16508626,
16508699-16508891,16508990-16509030
Length = 246
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 248 QTRTPALTTRGLKEADIDIVVDFIDRALKXGLEIIKVSGLKLVDFNKAIEENAEFKKKIE 427
+ RTPALT R K + + ++ DR LK K V+ +K +E+N FKK +
Sbjct: 47 ECRTPALTWRDYKRSTNERMMSPADRVLKGFWYCFKCDPTDKVEADKVLEQN--FKKNVP 104
Query: 428 NL 433
+
Sbjct: 105 QM 106
>06_03_0611 - 22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +2
Query: 224 WRAQPQRHQTRTPALTTRGLKEADI-----DIVVDFIDRALKXGLEIIKVSGLKLVDFNK 388
W A Q + R LTT ++EA++ I+VD + + E+I G V
Sbjct: 806 WDAVKQAKRDRAIVLTTHSMEEAEVLCDRLCIMVDGSLQCIGTPKELIARYGGYYV---L 862
Query: 389 AIEENAEFKKKIENLKEEVE-NYSKSFPLPGFDKY 490
+ + EF++++ENL ++ N K + L G KY
Sbjct: 863 TMTTSPEFEQEVENLARKLSPNARKVYHLSGTQKY 897
>03_02_0350 - 7734494-7734952,7735765-7736133
Length = 275
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 197 QQEHRARRHWRAQPQRHQTRTPALTT 274
QQ+H +H Q Q+HQ R P+ T
Sbjct: 197 QQQHHHHQHHHHQQQQHQLRQPSYAT 222
>01_05_0098 -
18088331-18088376,18088703-18088935,18089078-18089203,
18089387-18089494,18089646-18089709,18090256-18090409,
18090551-18090671,18091095-18091472
Length = 409
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 263 ALTTRGLKEADIDIVVDFI--DRALKXGLEIIKVSGLKLVDFNKAIEEN 403
AL TRGLK+ IVVD I D+ ++ K++ LK + F K +++
Sbjct: 319 ALRTRGLKDDTTCIVVDMIPPDQTIRHPSPPKKINKLKSLIFRKKTKDH 367
>10_08_0069 -
14627547-14627570,14628305-14628404,14628500-14628642,
14628759-14628863
Length = 123
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 236 PQRHQTRTPALTTRGLKEADIDIV 307
P RHQ R TTR L A +D++
Sbjct: 97 PSRHQRRRRGATTRALAPAQVDVM 120
>09_02_0237 + 6141048-6141962
Length = 304
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Frame = +3
Query: 51 AALCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAE------RVLELCSVACNKNTV 212
AALC ++ G + TD + D RG G P E R E C VA +
Sbjct: 198 AALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQPTECPACRRRFCERCGVAWHGGVS 257
Query: 213 PGDIGAL 233
G+ G L
Sbjct: 258 CGEYGEL 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,812
Number of Sequences: 37544
Number of extensions: 207403
Number of successful extensions: 655
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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