Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30214
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 146 3e-36
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 35 0.013
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 34 0.017
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 32 0.089
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.63
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 29 0.63
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 29 0.83
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 29 0.83
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 28 1.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.9
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 3.4
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 27 3.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.4
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 4.4
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 26 4.4
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.8
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 7.8
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 7.8
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 146 bits (354), Expect = 3e-36
Identities = 62/84 (73%), Positives = 79/84 (94%)
Frame = +3
Query: 255 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQL 434
PKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYRCKQL
Sbjct: 70 PKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYRCKQL 129
Query: 435 KRAALGRMATIMKRQGANLTYLEQ 506
KRAALGRMATI+KRQ ++L +LEQ
Sbjct: 130 KRAALGRMATIIKRQKSSLEFLEQ 153
Score = 111 bits (268), Expect = 7e-26
Identities = 46/60 (76%), Positives = 57/60 (95%)
Frame = +1
Query: 508 RQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQY 687
RQHL+RLP+IDP TRT+++CG+PNVGKSSF+NK+TRA V+VQPYAFTTKSL+VGH DY+Y
Sbjct: 155 RQHLSRLPAIDPNTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKY 214
Score = 83.4 bits (197), Expect = 3e-17
Identities = 36/64 (56%), Positives = 47/64 (73%)
Frame = +1
Query: 64 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 243
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 244 IQEF 255
+QEF
Sbjct: 66 LQEF 69
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 556 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 681
+ GFP+VGKS+ ++ IT+ Y FTT + G +Y
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEY 106
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 553 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 681
T+ GFP+VGKS+ + ++T E Y FTT + G Y
Sbjct: 65 TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQY 107
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 31.9 bits (69), Expect = 0.089
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRADVEVQPYAFTT 651
+ G PN GKS+ +N +T + +V Y FTT
Sbjct: 241 LVGLPNAGKSTLLNCLTASKSKVGEYEFTT 270
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.1 bits (62), Expect = 0.63
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 19 DTKIALN*NKMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 198
+TK+ LN ++S+ FKK + A D +K + P V+++H F +
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351
Query: 199 VKYTQQNFHDRLSRI 243
++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 29.1 bits (62), Expect = 0.63
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRADV-EVQPYAFTTK 654
+ GFPN GKSS IN + + V V P TK
Sbjct: 315 LIGFPNAGKSSIINTLRKKKVCNVAPIPGETK 346
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 28.7 bits (61), Expect = 0.83
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 207 YPAELPRPTVQNYSGIPKLDDVHPFY 284
+P L RP + N G+P D V P Y
Sbjct: 288 FPVRLARPALINAFGVPNYDSVVPMY 313
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 0.83
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 553 TIIICGFPNVGKSSFINKI 609
T+ + G+PNVGKSS IN +
Sbjct: 271 TVGVIGYPNVGKSSVINAL 289
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRA 618
I G PNVGKS+F IT++
Sbjct: 25 IVGMPNVGKSTFFRAITKS 43
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 70 KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 186
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 186 KPTYS*YFIMLVNDCRSFPLCFR*N 112
+PTY+ YFI L++D R C+ N
Sbjct: 95 RPTYTHYFIRLLHDKRLLQKCYTQN 119
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 553 TIIICGFPNVGKSSFINKI 609
T + G+PNVGKSS IN +
Sbjct: 303 TFGLVGYPNVGKSSTINAL 321
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 556 IIICGFPNVGKSSFINKITRAD 621
++ICG VGKSS I+ + + D
Sbjct: 6 VVICGDQGVGKSSLISALIQED 27
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 568 GFPNVGKSSFINKITRADVEVQPYAFTT 651
G P+ GKS+ +N +T A + + FTT
Sbjct: 11 GKPSSGKSTMLNALTDATAKTGNFPFTT 38
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 453 RMATIMKRQGANLTY-LEQSSTFSTFTIDRSLHQDDNH 563
++ T + AN+ ++ +S T T+DRSL D NH
Sbjct: 314 KIDTFSLDEAANIQIPIQSTSDNHTVTVDRSLSNDGNH 351
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 588 FSDIWESTDDYRPGV 544
FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 588 FSDIWESTDDYRPGV 544
FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 588 FSDIWESTDDYRPGV 544
FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 69 KDCCSPYS*GLYRHNFIEN 125
K SPYS G Y++N IEN
Sbjct: 501 KSSSSPYSRGPYKYNRIEN 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,452
Number of Sequences: 5004
Number of extensions: 63005
Number of successful extensions: 190
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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