Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30214
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)              117   1e-26
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               39   0.003
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                   36   0.031
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)              34   0.12 
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   32   0.50 
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)              31   0.66 
SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)                   31   1.2  
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)           29   4.7  
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   6.2  
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   28   6.2  
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   6.2  
SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)                   28   6.2  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         28   6.2  
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score =  117 bits (281), Expect = 1e-26
 Identities = 49/60 (81%), Positives = 58/60 (96%)
 Frame = +1

Query: 508 RQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQY 687
           RQHL+RLPSIDP TRT+++CGFPNVGKSSF+NK+TRADV+VQPYAFTTKSL+VGH DY+Y
Sbjct: 70  RQHLSRLPSIDPNTRTLLVCGFPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHMDYKY 129



 Score = 76.2 bits (179), Expect(2) = 4e-17
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = +3

Query: 252 IPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNV 374
           +P   DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID +
Sbjct: 12  VPTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM 52



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 49 MSLYNFKKIAVVPTAKD 99
          M+ YNFKKI VVPTAKD
Sbjct: 1  MAHYNFKKITVVPTAKD 17



 Score = 29.5 bits (63), Expect(2) = 4e-17
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 438 RAALGRMATIMKRQGANLTYLEQ 506
           R  + +M TIMKRQ  +L YLEQ
Sbjct: 46  RNLIDKMCTIMKRQNQSLQYLEQ 68


>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +1

Query: 568 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 681
           GFPN GKS+ +  I+RA   V  Y FTT +  VG  +Y
Sbjct: 2   GFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY 39


>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 556 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 681
           + + GFP+VGKS+ + K+T+       Y FTT +   G  +Y
Sbjct: 66  VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINY 107


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 556 IIICGFPNVGKSSFINKITRADVEVQPYAFTT 651
           + + GFP+VGKS+ + K+T+       Y FTT
Sbjct: 66  VALIGFPSVGKSTLLTKLTQTQSACASYEFTT 97


>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 553 TIIICGFPNVGKSSFINKITRA 618
           T+ + GFPNVGKSS IN + R+
Sbjct: 457 TVGVVGFPNVGKSSIINSLKRS 478


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 568 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQ 684
           GFP+VGKS+ +  +     EV  Y FTT +   G   Y+
Sbjct: 55  GFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYK 93


>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
          Length = 299

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 508 RQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSL-YVGH 672
           R  +A LP  D  T TI + G+PNVGKSS IN I ++  V V      TK   YV H
Sbjct: 149 RNAVADLPE-DALT-TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYVCH 203


>SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)
          Length = 357

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 556 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSL 660
           +++ G  NVGK+SF+  +T+ ++E  P AF    L
Sbjct: 9   VVLTGDNNVGKTSFLINLTQNELEGTPTAFANYEL 43


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 562 ICGFPNVGKSSFINKITRADV-EVQPYAFTTK 654
           + G+PNVGKSS IN +    V +V P A  TK
Sbjct: 172 LIGYPNVGKSSIINTLKAKKVCKVAPIAGETK 203


>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
          Length = 1873

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 464 HHETARS*SYIPGTVVNI*HVYHR 535
           HHET R    +P  V N  H YHR
Sbjct: 850 HHETRRYLDILPDLVTNYNHSYHR 873


>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 464 HHETARS*SYIPGTVVNI*HVYHR 535
           HHET R    +P  V N  H YHR
Sbjct: 588 HHETRRYLDILPDLVTNYNHSYHR 611


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 464 HHETARS*SYIPGTVVNI*HVYHR 535
           HHET R    +P  V N  H YHR
Sbjct: 127 HHETRRYLDILPDLVDNYNHTYHR 150


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 464 HHETARS*SYIPGTVVNI*HVYHR 535
           HHET R    +P  V N  H YHR
Sbjct: 484 HHETRRYLDILPDLVDNYNHTYHR 507


>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 330

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 216 ELPRPTVQNYSGIPKLDDVHPFYADLMNV 302
           ELP PT     G P  D+V+P  AD++ V
Sbjct: 124 ELPLPTSFANHGWPPKDEVYPLNADILKV 152


>SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)
          Length = 212

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 464 HHETARS*SYIPGTVVNI*HVYHR 535
           HHET R    +P  V N  H YHR
Sbjct: 120 HHETRRYLDILPDLVDNYNHTYHR 143


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 137 LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPEL 244
           L++S+  IIK QE  GFI EK   PS  S  DC E+
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLEV 566


>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 261 LDDVHPFYADLMNVLYDKDHYKLG---LGQLNTARHLI 365
           LDD   F  +L N L++++  KLG    G+L  A HL+
Sbjct: 483 LDDGRQFTTELFNTLHEEELAKLGGPSKGKLGQASHLL 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,812,212
Number of Sequences: 59808
Number of extensions: 458964
Number of successful extensions: 1048
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)