Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30214
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ... 189 2e-48
At1g10300.1 68414.m01160 GTP-binding protein-related contains si... 177 7e-45
At1g80770.1 68414.m09476 expressed protein 45 5e-05
At3g23860.1 68416.m02999 GTP-binding protein-related low similar... 43 2e-04
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 39 0.003
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 37 0.014
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 35 0.044
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 34 0.10
At1g72660.1 68414.m08403 developmentally regulated GTP-binding p... 34 0.10
At1g17470.1 68414.m02143 developmentally regulated GTP-binding p... 34 0.10
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 32 0.41
At1g30580.1 68414.m03741 expressed protein 32 0.41
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 31 0.72
At3g47450.2 68416.m05160 expressed protein 30 1.3
At3g47450.1 68416.m05159 expressed protein 30 1.3
At4g13030.2 68417.m02034 expressed protein 30 1.7
At4g13030.1 68417.m02033 expressed protein 30 1.7
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa... 30 1.7
At4g01560.1 68417.m00202 brix domain-containing protein contains... 29 2.2
At3g10830.1 68416.m01304 hypothetical protein 29 2.9
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p... 29 3.8
At4g32500.1 68417.m04626 potassium channel protein, putative sim... 28 5.0
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein... 28 5.0
At2g41670.1 68415.m05148 GTP-binding family protein contains Pfa... 28 5.0
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00... 28 5.0
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 28 6.7
>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
GTP-binding protein SP:Q99ME9 from [Mus musculus]
Length = 671
Score = 189 bits (460), Expect = 2e-48
Identities = 106/223 (47%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Frame = +1
Query: 49 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFH- 225
M YNFK+I VVP K+F+DIILS+TQR+TPTVVHK YKI+R+R FY+RKVKYTQ NFH
Sbjct: 1 MVQYNFKRITVVPNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHA 60
Query: 226 ------DRLSRI--IQEFQS*MMSIHFMLIS*TYCTTRIITNLDSDS*IQPD-ILLTMSQ 378
D R+ I F ++ + + ++ T + S I D + L
Sbjct: 61 KLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYG 120
Query: 379 KTM*DC*NMEIRCIGANSSNVRLWVAWPPS*NGKELILHTWNSRQHLARLPSIDPYTRTI 558
++ C +++ +G + ++ PS + + RQH+ARLPSIDP TRT+
Sbjct: 121 DSLYRCKCLKVAALGRMCTVLKRIT---PS------LAYLEQIRQHMARLPSIDPNTRTV 171
Query: 559 IICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQY 687
+ICG+PNVGKSSF+NK+TRADV+VQPYAFTTKSL+VGHTDY+Y
Sbjct: 172 LICGYPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKY 214
Score = 132 bits (320), Expect = 2e-31
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = +3
Query: 255 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQL 434
P+L+ +HPFY DL++VLY+KDHYKL LGQ+NTAR+LI ++KDYV+LLKYGDSLYRCK L
Sbjct: 70 PRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYGDSLYRCKCL 129
Query: 435 KRAALGRMATIMKRQGANLTYLEQ 506
K AALGRM T++KR +L YLEQ
Sbjct: 130 KVAALGRMCTVLKRITPSLAYLEQ 153
>At1g10300.1 68414.m01160 GTP-binding protein-related contains
similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
from [Homo sapiens];
Length = 687
Score = 177 bits (430), Expect = 7e-45
Identities = 100/222 (45%), Positives = 140/222 (63%), Gaps = 10/222 (4%)
Frame = +1
Query: 49 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 228
M YNFKKI VVP K F+DI+LS+TQR+TPTVVHK +I ++R FY+RKVK+T+ NF++
Sbjct: 30 MVKYNFKKITVVPNGKQFVDIVLSRTQRQTPTVVHKGDRICKLRSFYMRKVKFTESNFNE 89
Query: 229 RLSRII---------QEFQS*MMSIHFMLIS*TYCTTRIITNLDSDS*IQPD-ILLTMSQ 378
+LS II Q F ++ + + ++ T + S I D + L
Sbjct: 90 KLSAIIDEFPRLKEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMDYVKLLKHG 149
Query: 379 KTM*DC*NMEIRCIGANSSNVRLWVAWPPS*NGKELILHTWNSRQHLARLPSIDPYTRTI 558
++ C +++ +G + ++ PS + + RQH+ARLPSIDP TRT+
Sbjct: 150 DSLYRCKCLKVAALGRMCTVMK---GIGPS------LAYLEQVRQHIARLPSIDPNTRTL 200
Query: 559 IICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQ 684
+ICG PNVGKSSF+NK+TRADV VQPYAFTTKSL++GHTDY+
Sbjct: 201 LICGCPNVGKSSFMNKVTRADVAVQPYAFTTKSLFLGHTDYK 242
Score = 123 bits (297), Expect = 1e-28
Identities = 55/84 (65%), Positives = 69/84 (82%)
Frame = +3
Query: 255 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQL 434
P+L ++ PFY DL++VLY+KDHYKL LGQ+NTA++ I +A DYV+LLK+GDSLYRCK L
Sbjct: 99 PRLKEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMDYVKLLKHGDSLYRCKCL 158
Query: 435 KRAALGRMATIMKRQGANLTYLEQ 506
K AALGRM T+MK G +L YLEQ
Sbjct: 159 KVAALGRMCTVMKGIGPSLAYLEQ 182
>At1g80770.1 68414.m09476 expressed protein
Length = 451
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 517 LARLPSIDPYTRTIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQY 687
L +P +D T+ + G PNVGKSS + ++ E+ Y FTT+ + +GH Y
Sbjct: 243 LRAMPVVDLEMPTLCLVGAPNVGKSSLVRILSTGKPEICNYPFTTRGILMGHIVLNY 299
>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
renal failure gene protein) {Mus musculus}
Length = 230
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = +3
Query: 255 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG---DSLYRC 425
P + + P YA L++ Y+ HY + Q++ + L++ ++ +YV LL+ DS +C
Sbjct: 74 PCVRHLDPVYASLLHQRYNMYHYDRAVRQVSVTQTLVNVMSFNYVDLLRKDDDCDSRDKC 133
Query: 426 KQLKRAALGRMATIMKRQGANLTYLEQSSTF 518
+ L AL RM T K L L+Q F
Sbjct: 134 RSLGVTALARMLTFAKSCIPALNLLDQVREF 164
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQ 684
+ GFP+VGKS+ +NK+T EV Y FTT + G Y+
Sbjct: 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR 110
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 681
+ G PN GKS+ + ++RA V YAFTT +G+ +Y
Sbjct: 831 LVGMPNAGKSTLLGALSRAKPRVGHYAFTTLRPNLGNVNY 870
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 35.1 bits (77), Expect = 0.044
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 553 TIIICGFPNVGKSSFINKITRAD-VEVQPYAFTTKSLYVGHTD 678
T+ I G PNVGKSS IN + RA V V T+SL H D
Sbjct: 255 TVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTRSLQEVHLD 297
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 544 YTRTIIICGFPNVGKSSFINKITRAD-VEVQPYAFTTK 654
Y I I G PNVGKSS +N + R D V P + TT+
Sbjct: 367 YIPAIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTR 404
>At1g72660.1 68414.m08403 developmentally regulated GTP-binding
protein, putative very strong similarity to
developmentally regulated GTP binding protein (DRG1)
[Arabidopsis thaliana] GI:2345150
Length = 399
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 556 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 681
+ + GFP+VGKS+ + +T E Y FTT + G Y
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHY 106
>At1g17470.1 68414.m02143 developmentally regulated GTP-binding
protein (DRG1) identical to developmentally regulated
GTP binding protein (DRG1) [Arabidopsis thaliana]
GI:2345150
Length = 399
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 556 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDY 681
+ + GFP+VGKS+ + +T E Y FTT + G Y
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHY 106
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYQY 687
I G PN GKS+ ++ I+ A + Y FTT +G + Y
Sbjct: 383 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY 424
>At1g30580.1 68414.m03741 expressed protein
Length = 394
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRADVEVQPYAFTT 651
I G PNVGKS+ N +T+ + + + F T
Sbjct: 29 IVGLPNVGKSTLFNTLTKLSIPAENFPFCT 58
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 511 QHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTK 654
+ ARL S D ++ G+PNVGKSS IN + +V +V P TK
Sbjct: 298 RQFARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 345
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 550 RTIIICGFPNVGKSSFINKITRADVEVQPYA 642
R + I G NVGKS+FIN + + E P A
Sbjct: 280 RDVYILGAANVGKSAFINALLKTMAERDPVA 310
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 550 RTIIICGFPNVGKSSFINKITRADVEVQPYA 642
R + I G NVGKS+FIN + + E P A
Sbjct: 280 RDVYILGAANVGKSAFINALLKTMAERDPVA 310
>At4g13030.2 68417.m02034 expressed protein
Length = 479
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 541 PYTRTIIICGFPNVGKSSFINKITR 615
P T +I++ G GKSS +NKITR
Sbjct: 102 PKTTSIMLVGPKGAGKSSLVNKITR 126
>At4g13030.1 68417.m02033 expressed protein
Length = 481
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 541 PYTRTIIICGFPNVGKSSFINKITR 615
P T +I++ G GKSS +NKITR
Sbjct: 104 PKTTSIMLVGPKGAGKSSLVNKITR 128
>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 372
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 562 ICGFPNVGKSSFINKITRADV 624
I G+PNVGKSS IN++ + +
Sbjct: 218 IIGYPNVGKSSLINRLLKRKI 238
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 46 KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTP 141
K Y+ KKI T KDF +I+ T R+ P
Sbjct: 159 KRGTYDLKKIVEYATKKDFTSLIVVHTNRREP 190
>At3g10830.1 68416.m01304 hypothetical protein
Length = 147
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 64 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHY------KISRIRGFYIRKVKYTQQNFH 225
FKK++V+ T KDF+D I+S + + + + K I + V+ + F
Sbjct: 27 FKKMSVLLTEKDFVDAIVSVSLKDLTRSLFVRFEAKACPKFDLIHKTSVETVRCVGKTFM 86
Query: 226 DRLSRIIQEF 255
LS++ +EF
Sbjct: 87 HMLSKVSREF 96
>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
protein contains Pfam profile: PF03130 PBS lyase
HEAT-like repeat
Length = 1116
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Frame = +3
Query: 363 IDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIMKR----------QGANLTYLEQSS 512
ID VA V LLK+ Y ++++RAA+ M +M+ QG +L+YL+Q S
Sbjct: 711 IDQVAPTLVPLLKF----YFHEEVRRAAVSAMPELMRSAKLAIEKGESQGRDLSYLKQLS 766
Query: 513 TFSTFTIDRSLHQD 554
+ + +LH++
Sbjct: 767 DYIIPAMLEALHKE 780
>At4g32500.1 68417.m04626 potassium channel protein, putative
similar to potassium channel [Solanum tuberosum]
gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 880
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 330 GLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMAT-IMKRQGANL 491
G+G + AR I A +++K DSL ++ LG +AT I+ R+GA +
Sbjct: 808 GVGGVYPARVTISGEASSSGKVVKLPDSLEELIEIGEKKLGFVATKILSREGAEI 862
>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
(NAC2) identical to AtNAC2 [Arabidopsis thaliana]
GI:12060426; contains Pfam PF02365: No apical meristem
(NAM) domain; similar to jasmonic acid 2 GB:AAF04915
from [Lycopersicon esculentum]
Length = 364
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 401 IWRFVVSVQTAQTCGSGSHGHHHETARS*SYIPG 502
I+R + + +G H HHH +RS ++ PG
Sbjct: 197 IFRKIPPSLSMAAASTGLHQHHHNVSRSMNFFPG 230
>At2g41670.1 68415.m05148 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 386
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 547 TRTIIICGFPNVGKSSFINKI 609
T +++ G PNVGKS+ IN I
Sbjct: 136 TLLVMVVGVPNVGKSALINSI 156
>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
F-box domain
Length = 389
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 427 NSSNVRLWVAWPPS*NGKELILHTWNSRQHLARLPSIDPYTRTII-ICGFPNVGKSSFIN 603
N+ +RLW+ ++ H W+S+Q LAR D T TI + G + G+ +I+
Sbjct: 279 NNDGIRLWIL-------EDAEKHKWSSKQFLARYVHNDLRTNTISKLTGVTHAGEFVYIS 331
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 366 DNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATI 467
+NV K VRL Y +S K L+ A +G++ T+
Sbjct: 126 ENVMKINVRLHNYPESSISLKNLRAAYIGKLVTV 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,766
Number of Sequences: 28952
Number of extensions: 321808
Number of successful extensions: 887
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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