Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30213
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   3.4  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   3.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    21   7.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.9  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 269 VNLRVPYAPIFSP**SFEAKTKTIL 343
           V L   Y P+FS    F  +TKT+L
Sbjct: 343 VTLSAHYFPVFSACDYFTIETKTVL 367


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 269 VNLRVPYAPIFSP**SFEAKTKTIL 343
           V L   Y P+FS    F  +TKT+L
Sbjct: 269 VTLSTHYFPVFSACDYFTIETKTVL 293


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 556 KTFGANFSYFFHDFVIQRH 500
           K    NF  F++DF +QR+
Sbjct: 26  KYLRTNFPNFYNDFEVQRY 44


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 300 SRPSSPLKRKQKQ 338
           S P  PLKRKQ++
Sbjct: 210 SEPGIPLKRKQRR 222


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 27  KRKVYMYNNIHKIVEKSIINYSFRSEAGRVASVLYLIN 140
           K+  Y Y ++  ++EK     +FR+  G   S + +I+
Sbjct: 237 KKTRYYYRSVDDVIEKGKRPGAFRTTLGSELSKVKVID 274


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 562 SGKTFGANFSYFFHDFVIQRHV 497
           SG+T G+NFS F +      H+
Sbjct: 11  SGRTNGSNFSKFINCHYTSGHL 32


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/25 (28%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 198 DGLTD-RALIYILVSNLTVQNIITV 269
           DG+ +   ++++ ++N+T QN+  V
Sbjct: 441 DGVMNINGVLFVFLTNMTFQNVFAV 465


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/25 (28%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 198 DGLTD-RALIYILVSNLTVQNIITV 269
           DG+ +   ++++ ++N+T QN+  V
Sbjct: 441 DGVMNINGVLFVFLTNMTFQNVFAV 465


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,070
Number of Sequences: 336
Number of extensions: 3718
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)