Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30213
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    30   0.30 
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    29   0.92 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    28   1.2  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   3.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   6.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   6.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.6  

>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 568 RESGKTFGANFSYFFHDFVIQRHVSRYVGWLLGCCRRVQIPHSQHVEK 425
           + SG+   A +S  +H F  + H +    WLLG  R  +   SQHV++
Sbjct: 84  KSSGQQRAAYYSERYHSFRDKEHDTTLEKWLLGAYRGNEKFASQHVQE 131


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 84  NYSFRSEAGRVASVLYLINDGFAAEIDLLPSIRSSSKVDGLTDRALIYILVSNLTVQNII 263
           NYSF     +  S +YL+N+      +LL   +S+  +  +TD A +Y    N +  +I+
Sbjct: 53  NYSFADH--KYNSGIYLLNESTRNHQELLVHGKSNKALTWITDSAFLYAREDNSSSSSIL 110


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 190 LDDRMDGSRSISAAKPSLIKYRTLATRPASLRKL*FIIDFSTIL 59
           + +R++    I+  K +L   RTL T  +SLRKL  + D  TIL
Sbjct: 331 IQNRLEEVMEIAKGKSNLAYLRTLQTVVSSLRKL--VADLKTIL 372


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 274 IYTVIIFCTVKLETRM*IRAL-SVRPSTLLDDRMDGSRSISAAKPSLIKYRTLATRPASL 98
           +Y+++I   V       IR L   RPS+L   + DG  + S  KPS    +T       L
Sbjct: 202 VYSILIGALVFFLMDKGIRILIHERPSSLSKPKKDGEETSSVNKPSASSTQTDVKGVEGL 261

Query: 97  RK 92
           RK
Sbjct: 262 RK 263


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 150  AAEIDLLPSIRSSSKVDGLTDRALIYILVSNLTVQNIITV*IYECHTLLFSR 305
            AA +D+LP +   SK   LTD+       ++  ++N I V +     +L SR
Sbjct: 865  AASVDILPKVLPVSKTSDLTDKVNRRQRKNDKKIKNKIQVKLSSILEMLRSR 916


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 132 LINDGFAAEIDLLPSIRSSSKVDGLTDRALIYILVSNLTVQNI 260
           LIN+  A  + L     + S V+ L   AL   LVSN T+QN+
Sbjct: 488 LINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNV 530


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 175 DGSRSISAAKPSLIKYRTLATRPASLRKL*FIIDFSTIL 59
           D  + +    PSL+ + T+ T    LR+  F +DF  +L
Sbjct: 319 DNPKFMITGTPSLVLFFTIFTNAYKLRQTNFTLDFLWVL 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,980
Number of Sequences: 5004
Number of extensions: 61643
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)