Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30213
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684...    29   3.9  
09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932...    29   5.1  
08_02_0498 - 17815189-17815249,17815852-17815938,17816532-178165...    28   6.8  
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057...    28   6.8  

>05_05_0153 -
           22766805-22767023,22767662-22767940,22768294-22768401,
           22768500-22768779,22768871-22769174,22769367-22769975,
           22770186-22770411
          Length = 674

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 329 FSLQRTTRARK*ERMALVDLHSNNILHCQVRNQNV 225
           FSL+R     +    ALV LH  NI+HC ++ +N+
Sbjct: 503 FSLRRIQAIARQCLEALVYLHHLNIVHCDLKPENI 537


>09_02_0431 -
           9327167-9327226,9327347-9327474,9327594-9327709,
           9327816-9327895,9328787-9328912,9329676-9329856,
           9330514-9330578,9330655-9330915
          Length = 338

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 93  NCNLLLISPLFYECYYTYKP 34
           NCNL++I  LF   Y+ YKP
Sbjct: 304 NCNLVIIDFLFRHGYHVYKP 323


>08_02_0498 -
           17815189-17815249,17815852-17815938,17816532-17816587,
           17816625-17816721,17817085-17817152
          Length = 122

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 388 FTLFERISRPTFSFQHVVNEEFEHGDNTPTTIQHIDLRVVE*QNHEKNMKSLLRTSCHFL 567
           + LF   S+  FSFQ   N + EHG  +  + Q  +  V+     E +  SL   S  ++
Sbjct: 24  YILFANCSQELFSFQDARNMKMEHGQQSEAS-QFEEYCVLSVDTLENDAFSL---SSVWI 79

Query: 568 FNFCTV 585
           ++ CTV
Sbjct: 80  YSVCTV 85


>01_06_0117 +
           26605186-26605443,26605540-26605583,26605659-26605737,
           26605822-26605944,26606300-26606482,26606562-26606648,
           26608149-26608255,26608387-26608474,26608805-26608885,
           26608983-26609059,26609183-26609318,26609548-26609610,
           26609983-26610563,26610816-26610933
          Length = 674

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 272 LHSNNILHCQVRNQNVN*SPVSKTV 198
           LHS+ + H ++R +NV+ SP+ K V
Sbjct: 233 LHSHGLAHTELRLENVHVSPIDKHV 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,686
Number of Sequences: 37544
Number of extensions: 343134
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)