Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30213
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   30   2.3  
SB_20011| Best HMM Match : GED (HMM E-Value=0.65)                      29   4.0  
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         28   9.1  

>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 287 MALVDLHSNNILHCQVRNQNVN*SPVS 207
           +AL  LHS NI+HC ++ +NV  +P++
Sbjct: 598 LALKYLHSKNIVHCDLKPENVLLAPIT 624


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 196 TLLDDRMDGSRSISAAKPSLIKYRTLATRPASLRKL 89
           T L  +MDG++ +  A+  L+K+R L   P SLR L
Sbjct: 11  TDLSMKMDGNKVLRTARQLLLKFRKLPFIPCSLRGL 46


>SB_20011| Best HMM Match : GED (HMM E-Value=0.65)
          Length = 427

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 VVNEEFEHGDNTPTTIQHIDLRVVE*QNHEKNMKSLLRT 552
           VV + FE  DN+P   +H++ +++E    +K  K   R+
Sbjct: 385 VVRKLFEFFDNSPKRQEHLEFKIIELLQKKKKKKRYFRS 423


>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 648

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 118 ATRPASLRKL*FIIDFSTIL*MLLY--I*TFLFNHSIYL 8
           AT P + R +  I  FS IL  L+Y  +  FL  H IYL
Sbjct: 594 ATEPGNYRPISIICSFSKILEKLIYNQLIFFLEKHKIYL 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,107,851
Number of Sequences: 59808
Number of extensions: 424458
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)