Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30213
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane r...    28   6.0  
AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell...    28   6.0  
AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell...    28   6.0  
U39674-6|AAA80416.1|  291|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 657 IYNSLFNYNLMSTYPVRFSTVAFDNSTKIKEKVARRSEQTFHIFFM 520
           I+    N   +S + +R+ST A D  T +KE V+R  E    I+++
Sbjct: 420 IHEDSTNRKKLSDF-LRYSTSAGDEPTSLKEYVSRMKENQTQIYYI 464


>U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane
           receptor LIN-17 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 472 PTTIQHIDLRVVE*QNHEKNMKSLLRTSC--HFLFNFCTV 585
           P TI H D   +  Q H ++ K L++T C  H  F  C+V
Sbjct: 47  PNTILHNDQHTL--QTHTEHFKPLMKTKCHPHIHFFICSV 84


>AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform b protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 472 PTTIQHIDLRVVE*QNHEKNMKSLLRTSC--HFLFNFCTV 585
           P TI H D   +  Q H ++ K L++T C  H  F  C+V
Sbjct: 47  PNTILHNDQHTL--QTHTEHFKPLMKTKCHPHIHFFICSV 84


>AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform a protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 472 PTTIQHIDLRVVE*QNHEKNMKSLLRTSC--HFLFNFCTV 585
           P TI H D   +  Q H ++ K L++T C  H  F  C+V
Sbjct: 47  PNTILHNDQHTL--QTHTEHFKPLMKTKCHPHIHFFICSV 84


>U39674-6|AAA80416.1|  291|Caenorhabditis elegans Hypothetical
           protein C06E2.1 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 480 GCWGVVAVFKFLIHNMLKRESRARYPLEQRKGASTFM 370
           G +   AVFKF +   LK  +R +    ++KGA+ F+
Sbjct: 34  GPYAAEAVFKFYLEGKLKFPTRIQITESRKKGATGFL 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,340
Number of Sequences: 27780
Number of extensions: 337362
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)